PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0063ss00950.1 | ||||||||
Common Name | LR48_Vigan09g065100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 307aa MW: 34655.6 Da PI: 7.0711 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68 | 1.2e-21 | 69 | 129 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+ ql +Leel+++ +++psae+++++A++l +++ ++V++WFqN++a+e++ Vang0063ss00950.1 69 STRWSPTPVQLLVLEELYRQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 129 68*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.3 | 2.5e-36 | 68 | 131 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Vang0063ss00950.1 68 QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 131 789***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.95E-13 | 63 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.341 | 65 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-7 | 67 | 134 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-19 | 70 | 129 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 70 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.01E-6 | 70 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSDSYASTFH SPTPNVTHAT PKITTLCSIA QPYCICTHCN HILSFNHHVG NAAEEGTNNT 60 GSHVQSQQST RWSPTPVQLL VLEELYRQGT KTPSAEQIQQ IASQLRQFGK IEGKNVFYWF 120 QNHKARERQK RRRREMEENN AASSSEGLKE TGCGVKETKK WASTSNCSRH AEESAALDIA 180 EKGSNGWTQF EERGIQVLRR NISERRLQLQ DNMEMPCFPP TTMAALATSH RTLSTQLLIP 240 QSYNRESLNY YDGENADPRT LDLFPHKNDD QDGICLAERK SMFCASASMD TDITSSQFFE 300 FLPLRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0063ss00950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435666.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 6 | ||||
TrEMBL | A0A0L9VAR0 | 0.0 | A0A0L9VAR0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R2J0 | 0.0 | A0A0S3R2J0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157754.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15154 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 1e-29 | WOX family protein |
Publications ? help Back to Top | |||
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