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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0058ss00690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 602aa MW: 66281.5 Da PI: 6.7229 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.4e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ Vang0058ss00690.1 4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 29 | 2.1e-09 | 53 | 94 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k++ +fC +++ l+C+dC + +H+ H Vang0058ss00690.1 53 KLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAgslsanH 94 789******************************656666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.314 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.14E-8 | 3 | 47 | No hit | No description |
SMART | SM00336 | 8.7E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.044 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-8 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.73E-9 | 55 | 98 | No hit | No description |
Pfam | PF08263 | 2.5E-6 | 224 | 270 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
SuperFamily | SSF52058 | 1.02E-46 | 265 | 583 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.7E-31 | 276 | 426 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 1.3E-10 | 327 | 386 | IPR001611 | Leucine-rich repeat |
Gene3D | G3DSA:3.80.10.10 | 2.6E-23 | 427 | 568 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPRCDIC 60 QDKPAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVASSSSC TKDNEKSHLE 120 PPNRNAQQVS TKVPSQQVPS FTSSWAVDDF LELTGFESPE KKESLQFGEL EWLTDVGIFG 180 EQFTQEALAA AEKRTPTKIL FPLYSILTII LCLMPSQTKS STLQDDTLSL LAIKNAIDPN 240 SITPSSYLST WDFSVDPCES TGSQFLGILC YLPLDNSSSR VTEVDLDAIG YEGFLTPAIG 300 NLSELTVLNL NNNKFRGPIP ETIGKLRKLT SLTMSQNFFT GAIPQAITGL NNVRYIDLSG 360 NRLSGLIPTD ITALRTLSYL SLSNNEFAGR IPNLTGLWQL NTLDLSFNQF YGDLPNLPVS 420 LRNMYFRHNI LSGHLTPLKG LIHMKWLDVS DNRLSGAING NVFSLRNVVH LNVSFNRFTA 480 LDVINYSLLE PSLQVLEAQG NHLKGHLPVN LVSFVNLTSI NLANNQFSGS IPLEYGTKLK 540 SSWRSLHLDY NFLTGNLPRE FSHSTNVKGS LAKNCLKCPT NVGLCQGRQR PSSECVGQHN 600 V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4mn8_A | 1e-33 | 229 | 577 | 9 | 739 | LRR receptor-like serine/threonine-protein kinase FLS2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0058ss00690.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017425459.1 | 0.0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 | ||||
TrEMBL | A0A0S3SG07 | 0.0 | A0A0S3SG07_PHAAN; Uncharacterized protein | ||||
STRING | XP_004486909.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 2e-78 | salt tolerance homologue |