PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0058ss00690.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 602aa    MW: 66281.5 Da    PI: 6.7229
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0058ss00690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06444539
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        C+ +e+ +++  C  ++  lC++C +e H        H++
  Vang0058ss00690.1  4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                       7*****************************65667777765 PP
2zf-B_box292.1e-095394237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       + ++C+ +++k++ +fC +++ l+C+dC + +H+       H
  Vang0058ss00690.1 53 KLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAgslsanH 94
                       789******************************656666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
CDDcd000214.14E-8347No hitNo description
SMARTSM003368.7E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445299IPR000315B-box-type zinc finger
SMARTSM003364.6E-155299IPR000315B-box-type zinc finger
PfamPF006432.5E-85395IPR000315B-box-type zinc finger
CDDcd000212.73E-95598No hitNo description
PfamPF082632.5E-6224270IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520581.02E-46265583IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-31276426IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.3E-10327386IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.102.6E-23427568IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPRCDIC  60
QDKPAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVASSSSC TKDNEKSHLE  120
PPNRNAQQVS TKVPSQQVPS FTSSWAVDDF LELTGFESPE KKESLQFGEL EWLTDVGIFG  180
EQFTQEALAA AEKRTPTKIL FPLYSILTII LCLMPSQTKS STLQDDTLSL LAIKNAIDPN  240
SITPSSYLST WDFSVDPCES TGSQFLGILC YLPLDNSSSR VTEVDLDAIG YEGFLTPAIG  300
NLSELTVLNL NNNKFRGPIP ETIGKLRKLT SLTMSQNFFT GAIPQAITGL NNVRYIDLSG  360
NRLSGLIPTD ITALRTLSYL SLSNNEFAGR IPNLTGLWQL NTLDLSFNQF YGDLPNLPVS  420
LRNMYFRHNI LSGHLTPLKG LIHMKWLDVS DNRLSGAING NVFSLRNVVH LNVSFNRFTA  480
LDVINYSLLE PSLQVLEAQG NHLKGHLPVN LVSFVNLTSI NLANNQFSGS IPLEYGTKLK  540
SSWRSLHLDY NFLTGNLPRE FSHSTNVKGS LAKNCLKCPT NVGLCQGRQR PSSECVGQHN  600
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mn8_A1e-332295779739LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0058ss00690.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425459.10.0PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
TrEMBLA0A0S3SG070.0A0A0S3SG07_PHAAN; Uncharacterized protein
STRINGXP_004486909.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.12e-78salt tolerance homologue