PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0058ss00020.1

Common Name

LR48_Vigan05g197300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 440aa MW: 48285.8 Da PI: 6.6655

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0058ss00020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.5e-07	344	384	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P K++ a++L +A +Y+k L Vang0058ss00020.1 344 ARERRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 384 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	335	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-13	340	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-12	341	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-11	343	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	345	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-4	357	389	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MDGLSWDSSS QLVGNIPILW SSQPQDLEGE YHHSMPHLCS SVHNQTCYPY PSSEKAREMV 60 HPSTSEIMSI LPNMNLSQRT ATMPVKSGAV GTSWGEALTS QSCPSLSANM NQTSNYVADF 120 NMAHQQQHLI SGTQNVKATC SLESLDCLLS ATKNGNTDTS LEDDGISMMI LSDCRNLCNF 180 SYGSAVSSGE SESNASNARN SDMRYASVNE LDEAASQSFS DQYISQGRVI DSEVICTKGS 240 NSCFSVAQNS FATEGGFRLI SETSPKSKRP RWNRHPGSSN INFQQPNSSV SPSFEEPDPE 300 AIAQMKEMIY RAAAFRPVNL GLEVVEKPKR KNVRISTDPQ TVAARERRER ISERIRVLQK 360 IVPGGSKMDT ASMLDEAANY LKFLRAQVKT LENLGNKLDT MNCPPNIAFS FNPSFPVQTH 420 FPVQNPSGNT HNQQSKGRK*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MDGLSWDSSS QLVGNIPILW SSQPQDLEGE YHHSMPHLCS SVHNQTCYPY PSSEKAREMV  60
HPSTSEIMSI LPNMNLSQRT ATMPVKSGAV GTSWGEALTS QSCPSLSANM NQTSNYVADF  120
NMAHQQQHLI SGTQNVKATC SLESLDCLLS ATKNGNTDTS LEDDGISMMI LSDCRNLCNF  180
SYGSAVSSGE SESNASNARN SDMRYASVNE LDEAASQSFS DQYISQGRVI DSEVICTKGS  240
NSCFSVAQNS FATEGGFRLI SETSPKSKRP RWNRHPGSSN INFQQPNSSV SPSFEEPDPE  300
AIAQMKEMIY RAAAFRPVNL GLEVVEKPKR KNVRISTDPQ TVAARERRER ISERIRVLQK  360
IVPGGSKMDT ASMLDEAANY LKFLRAQVKT LENLGNKLDT MNCPPNIAFS FNPSFPVQTH  420
FPVQNPSGNT HNQQSKGRK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0058ss00020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423738.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	2e-78	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A0L9UNP1	0.0	A0A0L9UNP1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SFT2	0.0	A0A0S3SFT2_PHAAN; Uncharacterized protein
STRING	XP_007150551.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]