PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss02050.1
Common NameLR48_Vigan03g313100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 313aa    MW: 35749.3 Da    PI: 6.9387
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss02050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix673.8e-211681786
           trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                       m+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++    s +++y+++++
  Vang0057ss02050.1  1 MDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGG--SGSAKMSYYKEID 68
                       577899***********************************************98..34558*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.19E-21149No hitNo description
PfamPF138372.1E-16770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDALFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN LLKEFKKAKH QDRGGSGSAK  60
MSYYKEIDEI LRERNKNVQY KSPTPPPKVD SFMQFADKGS SSLVVIRHFW EPLGIDDTSI  120
SFGPVEATGR PTLNLERSLD HDGHPLAITT ADAVAAGGVP PWNWRETSGN GGESQSCCGR  180
VISVKWCDYT RRIGIDGTPE AIKEAIRAAF RLRTKRTFWL EDEDQIIRSI DREMPIGSYT  240
LHLDEGMAIK LCLYDESEHL PVHTEDKVFY TENDYRDFLT RRGWVCLREF DGYRNIDNLD  300
DLRPGAIYRG VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-351662286DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss02050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2852650.0EU285265.1 Glycine max GT-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494379.10.0trihelix transcription factor GT-1 isoform X1
SwissprotQ9FX531e-159TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0L9UB350.0A0A0L9UB35_PHAAN; Uncharacterized protein
STRINGXP_007163722.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-161Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]