PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 448aa MW: 49471.9 Da PI: 7.8149

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0057ss01680.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.2	4e-42	169	245	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dls+ak+yhr+h+vCe hsk+p+vlv+gle+rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+q+ Vang0057ss01680.1 169 CQVEGCGLDLSSAKDYHRKHRVCEGHSKSPKVLVAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPQP 245 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-34	161	230	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.47	166	243	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-39	167	248	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.5E-32	169	242	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEWNAKSLGQ WDWEHLFFFN TKATENPRLP TTDCSNEADR EINVGVFYPS GGSACSGSEL 60 VHASSPRSSK SASNNSLSNE DSKASVLTLE GSQDDSTGKK ELCPVETSQS AVPSPVSGEP 120 LLTLKLGKRL YFEDVCAGSD SKKASSFEVP ISSGKKYKTS NQNLQHPSCQ VEGCGLDLSS 180 AKDYHRKHRV CEGHSKSPKV LVAGLERRFC QQCSRFHALS EFDDKKRSCR KRLSDHNARR 240 RKPQPDSVQL NPSALSSSPY DGRQMMSPFA FSRSATNMGW QNLHSNKLPQ TKDFLPKPAK 300 AFDKIPSIVS MFSDDNSGLL TSRSIAAKTI VPGLEDPNSI SSCDPNGAQD VNRALSLLSS 360 NSWGPYETKF LSLERSSRTQ SMTHQQQRLP LASSSEYWHT DHQQQQPSPS TMSMCISFSD 420 CDTNNRFQDF QLLSAPYDSP FPCNHLD*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEWNAKSLGQ WDWEHLFFFN TKATENPRLP TTDCSNEADR EINVGVFYPS GGSACSGSEL  60
VHASSPRSSK SASNNSLSNE DSKASVLTLE GSQDDSTGKK ELCPVETSQS AVPSPVSGEP  120
LLTLKLGKRL YFEDVCAGSD SKKASSFEVP ISSGKKYKTS NQNLQHPSCQ VEGCGLDLSS  180
AKDYHRKHRV CEGHSKSPKV LVAGLERRFC QQCSRFHALS EFDDKKRSCR KRLSDHNARR  240
RKPQPDSVQL NPSALSSSPY DGRQMMSPFA FSRSATNMGW QNLHSNKLPQ TKDFLPKPAK  300
AFDKIPSIVS MFSDDNSGLL TSRSIAAKTI VPGLEDPNSI SSCDPNGAQD VNRALSLLSS  360
NSWGPYETKF LSLERSSRTQ SMTHQQQRLP LASSSEYWHT DHQQQQPSPS TMSMCISFSD  420
CDTNNRFQDF QLLSAPYDSP FPCNHLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-26	169	242	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	241	KKRSCRKRLSDHNARRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0057ss01680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017405570.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
Refseq	XP_017405571.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
Refseq	XP_017405572.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
TrEMBL	A0A0L9T4F1	0.0	A0A0L9T4F1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S1D3	0.0	A0A0S3S1D3_PHAAN; Uncharacterized protein
STRING	XP_007163771.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4630	30	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	7e-59	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]