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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0057ss01020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-X1 | ||||||||
Protein Properties | Length: 876aa MW: 96863.8 Da PI: 8.3423 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.5 | 9e-06 | 242 | 260 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H C + CH+G CppC+ Vang0057ss01020.2 242 CGVHHCTEVCHRGACPPCR 260 ******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 3.32E-5 | 72 | 150 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 78 | 144 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 2.00E-6 | 178 | 226 | No hit | No description |
SMART | SM00438 | 0.072 | 190 | 208 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.88E-10 | 232 | 280 | No hit | No description |
SMART | SM00438 | 6.5E-4 | 242 | 261 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.28E-9 | 285 | 332 | No hit | No description |
SMART | SM00438 | 9.1E-4 | 295 | 314 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.80E-8 | 339 | 383 | No hit | No description |
SMART | SM00438 | 0.16 | 349 | 369 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 170 | 498 | 513 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 160 | 521 | 566 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.7 | 603 | 630 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.016 | 640 | 658 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 61 | 703 | 725 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 876 aa Download sequence Send to blast |
MTSAWTLPHS HPSPPPPTVL SDSDSDADGL SSGTEAHRHS DLSDSIFKPY LEFSGHSGAD 60 LSKIQSFLTS SSAGALSCLI CLERIKPSDP TWSCSSLCFA VFHLICIQSW ARQASDLAAA 120 RAATRLPIST ATASDTALWN CPKCRSEYPK SLIPKMYLCF CGKVENPPND PWVLPHSCGE 180 VCGRPLKHNC GHHCLLLCHP GPCPSCPKLV KVRCFCGCIE DVRRCGFKEF SCNNPCSKVL 240 DCGVHHCTEV CHRGACPPCR TRGVYACQCG KVKEEKECCD RVFQCDHPCE KRLSCGKHVC 300 ERGCHSGECG ECPLKGKRTC PCGKRIYEGM PCDASVQLCG ATCDKMLPCG YHRCPERCHR 360 GQCVETCRVV VKKSCRCGSL KKESRFLAIK IWHVKGSARG CVTVVGMLAS GAAVMGIALP 420 AQRYAEGGFD VRTINALLHA IVCSCRGPCA PCPIMVTISC ACGETRFEVP CGTEMDQKPP 480 RCPKPCPVSP LCRHASNCKP HKCHYGACHP CRLPCAKEYQ CSHTCKLRCH GPKPPPKPEF 540 TLKPKKKKII QQSEGVPGTP CPPCPELVWR SCVGQHIGAD RMMVCSDKSQ FSCENLCGNP 600 LPCGNHYCTK TCHALDSQLR GSEPCEDCYL RCQKEREPAC PHNCPRSCHP GDCPPCKVLI 660 KRSCHCGAMV HVFECIYYNS LSAKDQETVR SCGGPCHRKL PNCTHLCPET CHPGECTNAE 720 KCCKKVTVRC KCQTLKKEWV CQDVQAAYHL MGCHPRDTPK NQFGIGLIPC NSDCKSKVQV 780 VESELQLRKS RVTEVQDQDA EKSVRKRRKR RERVLESKET SKLQKIISGA KRFLLFVFIL 840 IILVAATYYC YKGLLRLSDW MNEVDEQRQR YSRIK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 804 | 810 | RKRRKRR |
2 | 804 | 811 | RKRRKRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0057ss01020.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419064.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | A0A0S3S0T0 | 0.0 | A0A0S3S0T0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163547.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |