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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0057s00340.1 | ||||||||
Common Name | LR48_Vigan284s002600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23716.7 Da PI: 10.881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 47 | 93 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +e+Lr++lP++ K +Ka++L ++++ +k+L Vang0057s00340.1 47 KKHSEAEKRRRMRINGQYETLRTILPNL-----IKKDKASVLAETIKQVKEL 93 68*************************9.....5889999999999888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.386 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.4E-9 | 47 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.39E-8 | 47 | 98 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-12 | 47 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-13 | 48 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-9 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00528 | 137 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQHLRSYYNS EAQMIRGGFP QPFISRTYQT SFLKQRSKTE IKVVAAKKHS EAEKRRRMRI 60 NGQYETLRTI LPNLIKKDKA SVLAETIKQV KELKKKVSKV EQESCGSSSK DVVKFPSGAD 120 RLRLEKCNNE EDLVKATLSC EDSMGLMSAI SRAMGSVKTK VVKAEIVSVG GRNRSVLWVQ 180 GLGNDHMGML KSSLKIAMHK PAFKMRRSTH * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0057s00340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406625.1 | 1e-155 | PREDICTED: transcription factor bHLH131-like | ||||
Swissprot | P0CB25 | 4e-48 | BH131_ARATH; Transcription factor bHLH131 | ||||
TrEMBL | A0A0L9T7H0 | 1e-153 | A0A0L9T7H0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158377.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 4e-42 | bHLH family protein |
Publications ? help Back to Top | |||
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