PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057s00060.1
Common NameLR48_Vigan319s000500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 342aa    MW: 36776.5 Da    PI: 8.4829
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.4e-393595262
            zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Vang0057s00060.1 35 QEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVR 95
                      57899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-262493IPR003851Zinc finger, Dof-type
PfamPF027014.4E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSPDDIPPSK PATATTTDQE TQSSGGRKGS STRPQEQGLK CPRCDSPNTK FCYYNNYSLT  60
QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKKVRSSRLS CDSKDSGSSS SDLGGLKFLH  120
TLPPSMDFHL GGLPFPRLHH HPPATYNQFS SFGDTSSPSC FNLDPSPGTT SSSFAALNYP  180
FSYNGAIQGM SAMNVHSGHA SSIESLSSIN QDLHWKLQQQ RLAMLFGGDN GQKDHGGNGG  240
VSPTINHLEN QTQKPQPILF QNLEVSKHGI FPVENSRKEN GPCGDTHTPS TEWFFGNSYA  300
SVTPPTATTT SSGGPGNDNA SNWSSGVNAW GDVPQQYTAL P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406897.10.0PREDICTED: dof zinc finger protein DOF5.7
TrEMBLA0A0L9T8V20.0A0A0L9T8V2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3220.0A0A0S3T322_PHAAN; Uncharacterized protein
STRINGXP_007158346.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.14e-58Dof family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]