PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0051s00140.1 | ||||||||
Common Name | LR48_Vigan03g141000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 34495.7 Da PI: 5.5761 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.3e-30 | 140 | 197 | 2 | 58 |
--SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++p rsYYrCt ++C++kk+vers edp++++itYeg H h Vang0051s00140.1 140 DDGYKWRKYGQKSIKNSPNPsRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLH 197 8******************889**********************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.294 | 134 | 200 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-27 | 137 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-24 | 137 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-31 | 139 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-23 | 140 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
LSFLFQEGSC CPGLINMVES AMSKTMMEEV MATWSEGSEE DELVRELLDD GSPLLMVPQE 60 PIQNPITKPS STHHAFNSFL SNIYSGPTIS DIENALSVTN QGDHFPPLSS PRVSILERGL 120 SKIENKYTLK IKCFGNGMGD DGYKWRKYGQ KSIKNSPNPS RSYYRCTNPR CSAKKQVERS 180 IEDPDTLIIT YEGLHLHFAY PYFLMGQPDQ SQSHQPIKKS KPTSSQDQAQ VHIEDYVHEA 240 QSSATSGVLP STSLDSPQDM AQENLGSQGL LEDMVPFMVR NPANSVSSAH TNFSCSSFRS 300 PPTSPLWLKF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 140 | 197 | 15 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0051s00140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418022.1 | 0.0 | PREDICTED: probable WRKY transcription factor 49 isoform X1 | ||||
TrEMBL | A0A0L9U5C7 | 0.0 | A0A0L9U5C7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RV60 | 0.0 | A0A0S3RV60_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140517.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43290.1 | 4e-52 | WRKY DNA-binding protein 49 |
Publications ? help Back to Top | |||
---|---|---|---|
|