PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 320aa MW: 35744.3 Da PI: 7.3869

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0045ss01430.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22	4.3e-07	121	142	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H Vang0045ss01430.1 121 FCEVCGKGFTRDANLRMHMRAH 142 6*******************99 PP
2	zf-C2H2	13.2	0.00026	206	228	2	23
EETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCg.ksFsrksnLkrHirtH 23 +C+ C ksF s+Lk+H++ + Vang0045ss01430.1 206 SCERCRkKSFAVLSDLKSHMKQC 228 7*******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.03E-6	118	145	No hit	No description
SMART	SM00355	0.0018	120	142	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.508	120	147	IPR007087	Zinc finger, C2H2
Pfam	PF12874	7.1E-4	121	140	No hit	No description
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.3E-7	122	145	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	29	167	200	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	160	205	226	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.6E-5	219	253	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MPNTTQQFPI NNINFNNDSL HVSLRNLSQL STRMDSLQSF VSQSIQSHTL LTHHQMNIVS 60 NEILTAIRHV ITNGAALVAA SEDVLSLSET PTSEYSPNPN TNQTNVVELD AMELLAQHLH 120 FCEVCGKGFT RDANLRMHMR AHGDEFKTAD ALASRARGET RGKTTRFSCP FEGCNRNKTH 180 KKFRPLKSVF CLRNHFKRSH CPKTLSCERC RKKSFAVLSD LKSHMKQCRG EATWKCSCGT 240 TFSRKDKLFG HVALFEGHLP MLEEEKAVEG LVKESDGGLD GLPEGFFDGL DEFGFGSTES 300 TSSPEETSPW GFPQMETHF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0045ss01430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414287.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q943I6	2e-68	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A0L9TJC4	0.0	A0A0L9TJC4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QYN5	0.0	A0A0S3QYN5_PHAAN; Uncharacterized protein
STRING	XP_007159664.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	3e-69	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]