PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vang0045ss01150.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-other

Protein Properties

Length: 280aa MW: 31471 Da PI: 5.1309

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0045ss01150.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.6	4.9e-09	97	140	3	46
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV + Vang0045ss01150.1 97 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAI 140 566899************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.44E-8	78	140	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-9	89	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.135	92	152	IPR001356	Homeobox domain
SMART	SM00389	0.0024	95	152	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-6	97	140	IPR001356	Homeobox domain
CDD	cd00086	1.00E-6	97	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
LPKQNKGIKF KLLDLITSVL CTHEETWQLR FSGCSHDHLS TNRQTTKPVA LTMIMSDLHS 60 DEHSPRNNHV YGREFQSMLE GLDDEGCVEE PGHHAEKKRR LSVDQVKALE KNFEVENKLE 120 PDRKVKLAQE LGLQPRQVAI KELKSRLLLQ EESNTESDVS VKEEMITLQD SNPLCETAIP 180 GSESKELSYE CFNKSDEVLG AFKDGSSDSD SSAILNEENA NNNDNSPKNG TISSSGVMQS 240 QSFLSSSSPM NCFQFQKQFP TQVYSNGERS FVKRERVAW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0045ss01150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017410280.1	1e-113	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A0L9TJK4	1e-112	A0A0L9TJK4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QYJ6	1e-112	A0A0S3QYJ6_PHAAN; Uncharacterized protein
STRING	XP_007159709.1	1e-105	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1868	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-28	homeobox protein 16