 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Vang0045ss00130.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 306aa MW: 34442.5 Da PI: 9.1863 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0045ss00130.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 95.3 | 2.7e-30 | 46 | 95 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
Vang0045ss00130.1 46 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 95
79***********************************************8 PP
|
| 2 | K-box | 23.4 | 2.6e-09 | 113 | 148 | 3 | 38 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhl 38
+s+g s++ea+a+ +qqe+akL+ +i+nLq+ +R++
Vang0045ss00130.1 113 SSNGGSASEANAQFYQQEAAKLRVQISNLQNHNRQV 148
45566699**********************999985 PP
|
| 3 | K-box | 77.4 | 3.8e-26 | 163 | 227 | 34 | 98 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+ R+++Ge L++++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k+
Vang0045ss00130.1 163 NCRQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQLLRAKV 227
56************************************************************997 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.726 | 38 | 98 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 8.8E-42 | 38 | 97 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.4E-32 | 39 | 111 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 9.25E-45 | 39 | 115 | No hit | No description |
| PRINTS | PR00404 | 4.5E-32 | 40 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 40 | 94 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.9E-26 | 47 | 94 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-32 | 60 | 75 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-32 | 75 | 96 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 12.568 | 124 | 233 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 6.4E-19 | 163 | 227 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
LNLLPCPEYN FSILFPHQLP VMAFPNQSMS SVSPERKMGR GKIEIKRIEN TTSRQVTFCK 60
RRNGLLKKAY ELSVLCDAEV ALIVFSNRGR LYEYANNSVK ASIERYKKAS SDSSNGGSAS 120
EANAQFYQQE AAKLRVQISN LQNHNRQVGY SLLLFKYGNN VLNCRQMMGE ALSDMDAKDL 180
KNLETKLEKG ISRIRSKKNE LLFAEIEYMQ KRETDLHNNN QLLRAKVCHM ALYGREIPNE 240
LSTTTSEDTI WQKGKGVSIM LTCCLEAQAT NQCNLSLILV ASSKSLDYNP IITSMLDKTT 300
CPSNL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 4e-19 | 38 | 110 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
