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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang0039ss01810.1 |
Common Name | LR48_Vigan27s000500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
NAC |
Protein Properties |
Length: 318aa MW: 36763.1 Da PI: 6.289 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang0039ss01810.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 180.6 | 3.9e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
Vang0039ss01810.1 7 VPPGFRFHPTDEELVDYYLRKKVTSRRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 97
69****************************.9***************954555442556********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
k+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
Vang0039ss01810.1 98 KAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
*****.8899****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVT SRRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQAISFMQ DMDSPKQSSQ PNNLPYQFPY PCKKELDLPY 180 HLPLQLPLEN QKLLQSASNS ITPYAVVEQN HVMHQVQHSI MQQVQHSAQQ QNFQAVFGNN 240 ANEQVADWRA LDKYVASQLS QEDAPKENSF SNTGTNNNMF HVKNNSNIEQ LGDMDKEEMM 300 PENASTSNSS CPIDMWK*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |