PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0039ss00390.1
Common NameLR48_Vigan05g057100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 747aa    MW: 80893.6 Da    PI: 6.2294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0039ss00390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.5e-32320377260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  Vang0039ss00390.1 320 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHPK 377
                        8****************************************.***************85 PP
2WRKY102.82e-32535593159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Vang0039ss00390.1 535 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 593
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-29317378IPR003657WRKY domain
SuperFamilySSF1182908.89E-26318378IPR003657WRKY domain
SMARTSM007746.4E-36319377IPR003657WRKY domain
PROSITE profilePS5081123.502320378IPR003657WRKY domain
PfamPF031065.1E-25320376IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-37520595IPR003657WRKY domain
SuperFamilySSF1182902.09E-28527595IPR003657WRKY domain
PROSITE profilePS5081138.32530595IPR003657WRKY domain
SMARTSM007741.9E-37535594IPR003657WRKY domain
PfamPF031067.7E-25536593IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MAGIDDNVAL SGDWGLASPS PRTFFSRMLE EENVTRSVSE HSGSGRTGEF FSGPHEPSET  60
GKRNMQDATQ DGDSVAQLSF QTEQKPNSRG GLVERMAARA GFNAPRLNTE GIRSTDLSLN  120
SDIQSPYLTI PPGLSPTTLL DSPVFLANSL AQPSPTTGKF LFMSNGNMRH PELSSDAPEK  180
CKDNGFDDIY TSSFAFKPAT DSGSSFYHGA GRKINPTTFP QQSHPGIEVS AQSENSFHSQ  240
SVDAAKVQTE NKNGLHLQAD FAESPPEKDI KMFPADQRAF DAVGGGIEHS TPVEEHGDEE  300
GDQRANGDSV TGGVGGAPSD DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC QVKKKVERSH  360
EGHITEIIYK GTHNHPKPPP SRRSGIGSVN PHTDMQVDNP EHVELHNGGD GDIGWGNVQK  420
GNISGAANWK HENLEATSSA SIGPEYCNQS NLQTQNGGTL IDSGEAVDAS STFSNEEDED  480
DQGTHGSVSL GYDGEGDESE SKRRKLESYA DLSGATRAIR EPRVVVQTTS EVDILDDGYR  540
WRKYGQKVVK GNPNPRSYYK CTNAGCTVRK HVERASHDLK SVITTYEGKH NHDVPAARAS  600
SHVNANASNA NQASGVLHSH VHRPEPSQVH NGMGRLERPS LGSFNLPGRQ QLAHSHGFSF  660
GMNQQMLSNL AMSGLGHMQA KLPVMPVHPF LAQQQQQSPS NDFGFMMPKG EPNVEAIPER  720
GGGLNLPNGS SVYQEIMSRM PLGPHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36320596878Probable WRKY transcription factor 4
2lex_A2e-36320596878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0039ss00390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425342.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_017425343.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0L9UK900.0A0A0L9UK90_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SJI90.0A0A0S3SJI9_PHAAN; Uncharacterized protein
STRINGXP_007148682.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]