PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0039ss00230.1

Common Name

LR48_Vigan05g068100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

EIL

Protein Properties

Length: 602aa MW: 66091.6 Da PI: 6.7489

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0039ss00230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	284.2	5e-87	3	426	65	353
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSS CS EIN3 65 evcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcd 156 +c ++GfvYgiipekgkpv+gasd+Lr+WWk+ v+fd ngpaa+ y+ + + s+ + + sl++l+DTtlgSLLs l+q cd Vang0039ss00230.1 3 YICGVRGFVYGIIPEKGKPVSGASDNLRGWWKDRVKFDHNGPAAMLRYEEETGFEDMVSDGFNGQPLTAYSLNDLPDTTLGSLLSCLVQNCD 94 5799******************************************666555555555544467899******************* PP S-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHH CS EIN3 157 ppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfalls 248 pp rr+pl+kg++pPWWPtG+e ww+++g+ d g+ppykkphdlkk+wk+ vLtavikh+sp+i++ir+ +r s+ lqdk +es+++++ Vang0039ss00230.1 95 PPRRRYPLDKGIAPPWWPTGQEWWWAQMGFTIDPGPPPYKKPHDLKKVWKMCVLTAVIKHISPDIAKIRNIVRHSRTLQDKLNTRESAIWSA 186 **************************************************************************************** PP HHTTTTT-S--XXXX.XX........XXXXXXXXXXXXXXXXXXXX..........XXXXXX.XXXXXXXXXX................... CS EIN3 249 vlnqeekecatvsah.ss........slrkqspkvtlsceqkedve..........gkkeskikhvqavktta................... 302 ++++ee +++ +++ + s +++vt + ++ + + Vang0039ss00230.1 187 IVKREEYFARRSYPNfFQtlppragpS-VPYDNNVTNFIRGQQSNSlggtlnllggL---------------Nntpqhhnvangrawsfldg 262 *********99833333344422.22333333322222233345666655422...............0222233334455589 PP ............................................................................................ CS EIN3 303 ............................................................................................ 302 Vang0039ss00230.1 263 hnnpstssnaatillgnpppttdlitddgatsfhgvqidtapatnggarnffvgqfdpptptpisnlvhsgfirafldgqynppptsttitt 354 **************************************************************************************** PP .....................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 .....................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 +++ + ++k+ ++ + + + + c+ss+++++et ++f+d+n++++++ Vang0039ss00230.1 355 arssvgigngsnitmmnnivmSLDHAANKRKPGDDVQGITFPHEAYSCNSSECPYHETGFGFSDRNARNNHQ 426 *****************666666665578888888888889***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	7.0E-85	3	192	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.9E-59	70	201	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	1.03E-51	72	195	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MFYICGVRGF VYGIIPEKGK PVSGASDNLR GWWKDRVKFD HNGPAAMLRY EEETGFEDMV 60 SDGFNGQPLT AYSLNDLPDT TLGSLLSCLV QNCDPPRRRY PLDKGIAPPW WPTGQEWWWA 120 QMGFTIDPGP PPYKKPHDLK KVWKMCVLTA VIKHISPDIA KIRNIVRHSR TLQDKLNTRE 180 SAIWSAIVKR EEYFARRSYP NFFQTLPPRA GPSVPYDNNV TNFIRGQQSN SLGGTLNLLG 240 GLNNTPQHHN VANGRAWSFL DGHNNPSTSS NAATILLGNP PPTTDLITDD GATSFHGVQI 300 DTAPATNGGA RNFFVGQFDP PTPTPISNLV HSGFIRAFLD GQYNPPPTST TITTARSSVG 360 IGNGSNITMM NNIVMSLDHA ANKRKPGDDV QGITFPHEAY SCNSSECPYH ETGFGFSDRN 420 ARNNHQLTCQ YRSKNPLQVV GVGGLMPSQI GCGNSIVNMP LVQSRNFTSS VTDQNQTFTV 480 GDMGMHNMNV PCLAGQNQHL QTVQTQVYND SFFDGRICLD KDVFGNNMYV CSLESKNQXQ 540 VQNVGGTSGH SLNAEVSNVV HGNLSTSITV DSPFAWDSNN SQAEFLDSPL LTTADQDLLW 600 P*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MFYICGVRGF VYGIIPEKGK PVSGASDNLR GWWKDRVKFD HNGPAAMLRY EEETGFEDMV  60
SDGFNGQPLT AYSLNDLPDT TLGSLLSCLV QNCDPPRRRY PLDKGIAPPW WPTGQEWWWA  120
QMGFTIDPGP PPYKKPHDLK KVWKMCVLTA VIKHISPDIA KIRNIVRHSR TLQDKLNTRE  180
SAIWSAIVKR EEYFARRSYP NFFQTLPPRA GPSVPYDNNV TNFIRGQQSN SLGGTLNLLG  240
GLNNTPQHHN VANGRAWSFL DGHNNPSTSS NAATILLGNP PPTTDLITDD GATSFHGVQI  300
DTAPATNGGA RNFFVGQFDP PTPTPISNLV HSGFIRAFLD GQYNPPPTST TITTARSSVG  360
IGNGSNITMM NNIVMSLDHA ANKRKPGDDV QGITFPHEAY SCNSSECPYH ETGFGFSDRN  420
ARNNHQLTCQ YRSKNPLQVV GVGGLMPSQI GCGNSIVNMP LVQSRNFTSS VTDQNQTFTV  480
GDMGMHNMNV PCLAGQNQHL QTVQTQVYND SFFDGRICLD KDVFGNNMYV CSLESKNQXQ  540
VQNVGGTSGH SLNAEVSNVV HGNLSTSITV DSPFAWDSNN SQAEFLDSPL LTTADQDLLW  600
P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	1e-56	70	200	2	132	Protein ETHYLENE INSENSITIVE 3
4zds_B	1e-56	70	200	2	132	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0039ss00230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027924065.1	0.0	protein ETHYLENE-INSENSITIVE 3-like 1a
TrEMBL	A0A0L9UKJ1	0.0	A0A0L9UKJ1_PHAAN; Uncharacterized protein
STRING	GLYMA06G47181.1	1e-165	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40675	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	4e-86	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]