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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0033ss00800.1 | ||||||||
Common Name | LR48_Vigan01g121800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||
Protein Properties | Length: 290aa MW: 31718 Da PI: 6.692 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 203.8 | 6.8e-63 | 6 | 165 | 2 | 168 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnveke 89 ++f+ +eq+Cyv+C+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++k+s ql+a+ sh + +++++e+ ++ k+ Vang0033ss00800.1 6 HLFDLPEQICYVECGFCTTILMVSVPCSSLSTVVTVRCGHCTSLLSVNMNKTSfvpfQLRASLSH--------VEPNEGSSEDGAACKTLKN 89 7899**********************************************998444444444444........6666666665555555544 PP YABBY 90 esastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 s+s + s+ e+e++p++ v++PPekrqr Psayn+fikeei+r+ka+nP+++hreafs+aaknWa fP+ h Vang0033ss00800.1 90 YSSSVVTY----SDCEEENTPQTSSvVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPPSHC 165 44443333....3445555555554499*************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-62 | 11 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.62E-9 | 107 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-5 | 113 | 163 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 4.32E-4 | 121 | 164 | No hit | No description |
Gene3D | G3DSA:1.20.140.40 | 3.8E-6 | 204 | 272 | IPR006501 | Pectinesterase inhibitor domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0043086 | Biological Process | negative regulation of catalytic activity | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0004857 | Molecular Function | enzyme inhibitor activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYVECG FCTTILMVSV PCSSLSTVVT VRCGHCTSLL SVNMNKTSFV 60 PFQLRASLSH VEPNEGSSED GAACKTLKNY SSSVVTYSDC EEENTPQTSS VVNKPPEKRQ 120 RTPSAYNCFI KEEIKRLKAE NPKMAHREAF STAAKNWANF PPSHCKGEAD SCKILHLDCH 180 VESPNASQVT TLKIFNFSTI SSLLESNITD PELLFKLSLR VAIDELSKLS NFPSKLRANA 240 EHDARLQKAI NVYSSVIGDA LDRLNDSISA LGTVTGRIVS STSVNNVEM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0033ss00800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-171 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435243.1 | 1e-139 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 4e-67 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0L9TM39 | 0.0 | A0A0L9TM39_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153748.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-69 | YABBY family protein |
Publications ? help Back to Top | |||
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