PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0033ss00680.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 452aa    MW: 50994.6 Da    PI: 8.3763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0033ss00680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13296339755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          Er+RR++i++++++Lr+l+Pk      +K++ a+iL  Av+YIk+Lq
  Vang0033ss00680.1 296 VTERNRRNKIKKGLFTLRSLVPKI-----TKMDRAAILADAVDYIKELQ 339
                        57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-1410148IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.33E-13287342No hitNo description
PROSITE profilePS5088814.951289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16289355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-15295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-11296339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MRGLGVVEWL RPLVETNVWD YVVVWKYGDD PTRFIEWIGC CCRGSCSVNI CVESKEEKGE  60
ECHLAPICRD KYLQHHVRTK ACEALAQLPL ALSLYSGVHG EVAISQQSRW LNKDSIGTQV  120
LIPIVGGLIE LFTEKLIPMD MNIIEFITAH GCVSLKQEAI SAQSYTSLNI IEHLPLREQY  180
SHWWLPHMSA TLTPSVHQPA TKQCNSHPSI EGPPRGSNPS TEEPSFDSKF VGLIPDECLK  240
QSTKMSPISK TKMPKYSKTS GKQQRGLSSH CSYGEEDKSK LVKEPQKERY QAKNLVTERN  300
RRNKIKKGLF TLRSLVPKIT KMDRAAILAD AVDYIKELQA QVNELKNEGS ALEVQDCMNT  360
PKLRKTADKE QEGTRSNTLN QSSSDCTKKM QMEVQAEVHY IGKKDFLIKL NCEQKQGRFS  420
KLIESIHSIG LQVTSANMTT FDDKVLNILT VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299306NRRNKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0033ss00680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416628.10.0PREDICTED: transcription factor bHLH90
TrEMBLA0A3Q0EPX90.0A0A3Q0EPX9_VIGRR; transcription factor bHLH90
STRINGXP_007153735.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-64bHLH family protein