PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0033ss00350.1
Common NameLR48_Vigan511s008300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 294aa    MW: 31201.6 Da    PI: 7.4309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0033ss00350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.9e-131155345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        W++e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++ 
  Vang0033ss00350.1 11 EWSKEQDKAFENALAIHPEDasdRWEKIAADVP-GKTLEEIKHHYK 55
                       7********************************.***********7 PP
2Myb_DNA-binding43.85.8e-14122166347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Vang0033ss00350.1 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                        6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.924762IPR017884SANT domain
SMARTSM007179.5E-11860IPR001005SANT/Myb domain
SuperFamilySSF466891.59E-111066IPR009057Homeodomain-like
PfamPF002496.2E-101155IPR001005SANT/Myb domain
CDDcd001671.19E-101158No hitNo description
Gene3DG3DSA:1.10.10.601.3E-51162IPR009057Homeodomain-like
PROSITE profilePS5129417.61114171IPR017930Myb domain
SuperFamilySSF466898.22E-17117172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17119169IPR006447Myb domain, plants
SMARTSM007174.5E-11119169IPR001005SANT/Myb domain
PfamPF002497.2E-12122166IPR001005SANT/Myb domain
CDDcd001671.25E-10122167No hitNo description
Gene3DG3DSA:1.10.10.605.1E-11122165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTADEVGSSS EWSKEQDKAF ENALAIHPED ASDRWEKIAA DVPGKTLEEI KHHYKLLVED  60
INQIESGCVP LPSYNYPSEG SASHASDEGA GKKGGSSWNS NNESSHGNKA SRSDQERRKG  120
IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVNN GDVSAPQGPI TGQTNGSAAN SGKPTKPAPP TPSAAPSVGI YAAPTIGQPI  240
GPLVSAVGTP VNLPASAHMA YGLGAPVPGT VVPGAPMNLG PVPYPMPHTS AHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-19774673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0033ss00350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966930.0BT096693.1 Soybean clone JCVI-FLGm-25B10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408708.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017408709.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017408710.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017408711.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-126SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0L9TCB50.0A0A0L9TCB5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R1Z30.0A0A0S3R1Z3_PHAAN; Uncharacterized protein
STRINGXP_007153659.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-112MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]