PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0029ss00410.1
Common NameLR48_Vigan05g129800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 387aa    MW: 43477.8 Da    PI: 8.3987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0029ss00410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-192572148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+d+++++G g W+t ++  g++R++k+c++rw +yl
  Vang0029ss00410.1 25 KGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLRRCGKSCRLRWANYL 72
                       79********************************************97 PP
2Myb_DNA-binding53.94.2e-1778122147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rgr++ eE+e +++++  lG++ W+tIa+ ++ gRt++++k++w+++
  Vang0029ss00410.1  78 RGRFSFEEEEAIIQLHSVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 122
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-251875IPR009057Homeodomain-like
PROSITE profilePS5129419.6252072IPR017930Myb domain
SuperFamilySSF466892.4E-3122119IPR009057Homeodomain-like
SMARTSM007173.3E-152474IPR001005SANT/Myb domain
PfamPF002494.2E-172572IPR001005SANT/Myb domain
CDDcd001672.31E-122772No hitNo description
PROSITE profilePS5129426.1273127IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2676127IPR009057Homeodomain-like
SMARTSM007173.4E-1677125IPR001005SANT/Myb domain
PfamPF002491.2E-1478122IPR001005SANT/Myb domain
CDDcd001677.72E-1280123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
LGIFCHCSIF FIMTKSSTEK NGLKKGPWTP EEDQKLIDYI QKHGHGKWRT LPKNAGLRRC  60
GKSCRLRWAN YLRPDIKRGR FSFEEEEAII QLHSVLGNKW STIAANLPGR TDNEIKNYWN  120
THIKKKLFKM GIDPVTHAPR LDVLQLASIL NTSLFNSSPQ FNYPFLSGRS VINSSQLLSL  180
LSTLLSCQSR NNPDNVLNHN NFHQNDNQLL QNQPQCTQMQ LADTLQTFQP NQPQVSLQEN  240
LIAKSNNPLN VDHQLMKSKL ENQISPVATS FTHQNTLPNL WHYDNISDLQ IAQSSSAMQC  300
FSSPKFNSIF NSLLENQNLC NNEGMPNFNL SSLLSSTTSS SSPSTLNSSS STTFVNGTTE  360
DERDTYGSSN MLMYNISNGL NDSGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32231275108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0029ss00410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424657.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A0L9ULR40.0A0A0L9ULR4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SI660.0A0A0S3SI66_PHAAN; Uncharacterized protein
STRINGGLYMA13G35810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.17e-88MYB-like 102
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]