PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vang0027ss00450.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 245aa MW: 27720.5 Da PI: 4.9934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0027ss00450.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1e-05	81	113	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++f L +P + kK +K++iL +A++Y+k+L Vang0027ss00450.1 81 TERFIALSATIPGL-----KKTDKSSILGEAINYVKEL 113 67788888899998.....8****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.318	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0018	71	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.10E-4	79	117	No hit	No description
SuperFamily	SSF47459	1.11E-9	79	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-11	80	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
LQNQHFCFLL SHGASMAELL SSNGKNRNTR HGDLMLEECH TQEEDFLREI LGEPGFSSET 60 ETHHHNFTSP TDAETLTMEL TERFIALSAT IPGLKKTDKS SILGEAINYV KELKERVTEL 120 EERNKRGKES VMILKKSDVC ESSERDSKDW CRMLPDIEAR VMENEVLIEI HCEKEEGVEL 180 KLLDHLENLH LCVTATSVLP FGNSTLGITI IAQMGDAYKM TVNDVVKNLR KVFMNHMNIN 240 GDPY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0027ss00450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424102.1	1e-117	PREDICTED: transcription factor bHLH18-like isoform X1
Refseq	XP_017424103.1	1e-117	PREDICTED: transcription factor bHLH25-like isoform X2
TrEMBL	A0A0L9UQ37	1e-116	A0A0L9UQ37_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SF60	1e-116	A0A0S3SF60_PHAAN; Uncharacterized protein
STRING	GLYMA13G44594.1	4e-93	(Glycine max)
STRING	XP_007150795.1	1e-92	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13110	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-32	bHLH family protein