PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0026ss00340.1
Common NameLR48_Vigan499s000900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 284aa    MW: 31557.6 Da    PI: 6.4029
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0026ss00340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28e-202990257
                       T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Vang0026ss00340.1 29 STRWTPTTDQIRILKDLYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 90
                       58*****************8567*************************************97 PP
2Wus_type_Homeobox113.79.6e-372892265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Vang0026ss00340.1 28 SSTRWTPTTDQIRILKDLYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 92
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-71090IPR009057Homeodomain-like
SuperFamilySSF466897.7E-122397IPR009057Homeodomain-like
PROSITE profilePS5007110.9162591IPR001356Homeobox domain
SMARTSM003891.3E-52795IPR001356Homeobox domain
CDDcd000861.59E-73092No hitNo description
PfamPF000463.1E-173090IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMEPQQPQGS QPNDEGASGK GGFLSRQSST RWTPTTDQIR ILKDLYYNNG IRSPSAEQIQ  60
RISARLRQYG KIEGKNVFYW FQNHKARERQ KKRFTSDNVP MQRPPAPSNA LPWKPDQDPP  120
IHTNYSNISS TGISSASSSS VEIITVGQMG NYGYGSVPME KSFRDCSISA GGSSGHVGIN  180
HNLGWVGVDP YSSPYANFFG KIRPTEETLE EEQEEDGAAE IETLPLFPMH GEDIHGYCNL  240
KSNNSYNYDG NGWYHSEDGF KNGSRASLEL SLNSYTRRSP DLA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0026ss00340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408436.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ8LL115e-87WUS_PETHY; Protein WUSCHEL
TrEMBLA0A0L9TBR80.0A0A0L9TBR8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T4V70.0A0A0S3T4V7_PHAAN; Uncharacterized protein
STRINGXP_007157924.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-46WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]