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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0026ss00220.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 230aa MW: 25627.4 Da PI: 7.8531 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.1e-07 | 47 | 77 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C+ +e+ ++ fC ++ lC+ C ++ H Vang0026ss00220.2 47 TLCDACESAAAIVFCAADEAALCRACDEKVH 77 57**************************998 PP | |||||||
2 | zf-B_box | 30.4 | 8.2e-10 | 96 | 135 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce++++ lC +C + H g H Vang0026ss00220.2 96 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 135 5799**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.6E-10 | 44 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.21 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-5 | 47 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.86E-7 | 47 | 89 | No hit | No description |
SuperFamily | SSF57845 | 1.35E-5 | 92 | 130 | No hit | No description |
PROSITE profile | PS50119 | 9.158 | 95 | 140 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-11 | 95 | 140 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-7 | 96 | 129 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.52E-7 | 98 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MALVVVAEKE GEVRQRLGRM KETRNMGRMW VPCQIINWWW ESPTMRTLCD ACESAAAIVF 60 CAADEAALCR ACDEKVHMCN KLASRHVRVG LASPSDVPRC DICENAPAFF YCETDGSSLC 120 LQCDMIVHVG GKRTHGRYLL FRQRVEFPGD KSSHAENPGS QPLEPGESKR GQNQLPKLKM 180 GEKQHNHVMP LLPTPGSAAD GHTKMETKMI DLNMKPNNRL HEQASNNQP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0026ss00220.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095448 | 0.0 | BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA. | |||
GenBank | BT098772 | 0.0 | BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427535.1 | 1e-137 | PREDICTED: B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 3e-71 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A4D6LRG1 | 1e-154 | A0A4D6LRG1_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007157945.1 | 1e-129 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-73 | DBB family protein |