PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0026ss00220.1
Common NameLR48_Vigan06g051500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 186aa    MW: 20342.2 Da    PI: 7.4349
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0026ss00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-07433534
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                        C+ +e+  ++ fC  ++  lC+ C ++ H
  Vang0026ss00220.1  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                       7**************************998 PP
2zf-B_box30.95.8e-105291237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Vang0026ss00220.1 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91
                       5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000212.13E-6345No hitNo description
PfamPF006437.4E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578459.16E-64886No hitNo description
SMARTSM003362.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006439.2E-85290IPR000315B-box-type zinc finger
CDDcd000212.67E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKSSH AENPGSQPLE  120
PGESKRGQNQ LPKLKMGEKQ HNHVMPLLPT PGSAADGHTK METKMIDLNM KPNNRLHEQA  180
SNNQP*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0026ss00220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954480.0BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987720.0BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427535.11e-137PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM53e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0L9URP61e-135A0A0L9URP6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T5591e-135A0A0S3T559_PHAAN; Uncharacterized protein
STRINGXP_007157945.11e-129(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-73DBB family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]