PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss03330.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 287aa    MW: 33239.8 Da    PI: 8.2642
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss03330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.53.9e-2234128190
               FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                        +fY+ +Ak+ GFsvr+ +s+k+  ++ + i+kr+f C + g ++++k ++++++r+r+++r++C akl ++k++   ++kw+vt + + HnH
  Vang0022ss03330.1  34 NFYCLFAKTSGFSVRRGHSYKRnnNNIEDIYKRKFICHRAGVAKQRKITEVENQRKRKSSRCNCSAKLLISKRTfgfEEKWMVTCFXNSHNH 125
                        6*******************9944444689*******************************************9999*************** PP

               FAR1  88 ela 90 
                        +l 
  Vang0022ss03330.1 126 ALL 128
                        995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-2034128IPR004330FAR1 DNA binding domain
PfamPF105511.3E-6250285IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKEILNEPLL EGEYANDSTL FKGKLFNSDI DAYNFYCLFA KTSGFSVRRG HSYKRNNNNI  60
EDIYKRKFIC HRAGVAKQRK ITEVENQRKR KSSRCNCSAK LLISKRTFGF EEKWMVTCFX  120
NSHNHALLDE KEIRFLPAYR DIPINDQARI LLLSKVGCSV SLIMRVLEAE KGIEAGHLPF  180
LDKDIRNFIK SQSSIDKEND ASNVLKLCKD LKDKDDAFQY DFTLDESNKL EHIIWVFGDL  240
IRAYEAFGDV VVFDTTYRIN RYDMPLGLWV GVDNHGSSIF FLVVFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss03330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431847.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S3UKG51e-179A0A1S3UKG5_VIGRR; protein FAR1-RELATED SEQUENCE 11-like
STRINGAES987361e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.16e-76FAR1-related sequence 11