PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0022ss00680.1

Common Name

LR48_Vigan05g023400

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 269aa MW: 30586.2 Da PI: 9.7023

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0022ss00680.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.2	3.9e-37	2	112	21	128
NAM 21 kkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvf 108 +k+++k++++ e ik++diyk++PwdLp ++ +++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+s+ ++ +glkktLv+ Vang0022ss00680.1 2 RKLDKKPISI-ELIKQIDIYKYDPWDLPkSNGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQggeGNDCIGLKKTLVY 92 7899999999.89*************44555578899********************************96655555***** PP NAM 109 ykgrapkgektdWvmheyrl 128 y+g+a kg+ktdW+mhe+rl Vang0022ss00680.1 93 YRGSAGKGTKTDWMMHEFRL 112 ****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-41	1	146	IPR003441	NAC domain
PROSITE profile	PS51005	42.048	1	146	IPR003441	NAC domain
Pfam	PF02365	3.5E-13	16	112	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
RRKLDKKPIS IELIKQIDIY KYDPWDLPKS NGSGGEKEGY FFCRRGRKYR NSIRPNRVTG 60 SGFWKATGID KPVYSQGGEG NDCIGLKKTL VYYRGSAGKG TKTDWMMHEF RLPSNTDTNT 120 SLPNSRNYVD VPQEAEIWTL CRIFKRNVSQ RKHVADLKQV SAKRHAFYDK SSRASNMESD 180 SGNQESYINF GGYYHNEQKP VINYTNCDKR NQFSVVSQLC STVAQQQPQL TAPSSNLWSN 240 PPGNDFFTFD NWDELGSVVK FAVDSPSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-37	2	152	37	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-37	2	152	37	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-37	2	152	37	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-37	2	152	37	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-37	2	152	40	174	NAC domain-containing protein 19
3swm_B	5e-37	2	152	40	174	NAC domain-containing protein 19
3swm_C	5e-37	2	152	40	174	NAC domain-containing protein 19
3swm_D	5e-37	2	152	40	174	NAC domain-containing protein 19
3swp_A	5e-37	2	152	40	174	NAC domain-containing protein 19
3swp_B	5e-37	2	152	40	174	NAC domain-containing protein 19
3swp_C	5e-37	2	152	40	174	NAC domain-containing protein 19
3swp_D	5e-37	2	152	40	174	NAC domain-containing protein 19
4dul_A	4e-37	2	152	37	171	NAC domain-containing protein 19
4dul_B	4e-37	2	152	37	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0022ss00680.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424751.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	6e-70	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0L9UIA7	0.0	A0A0L9UIA7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SKB6	0.0	A0A0S3SKB6_PHAAN; Uncharacterized protein
STRING	XP_007149303.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-72	NAC family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]