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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0021ss01420.1 | ||||||||
Common Name | LR48_Vigan05g188700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 273aa MW: 29604.3 Da PI: 10.1519 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.5 | 1.4e-38 | 38 | 97 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Vang0021ss01420.1 38 EGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 97 5679*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 24 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.1E-33 | 40 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MLPTMPQHPQ EPHVGVHEAA GSIRPGLMAD RSKIPAQEGA LKCPRCESTN TKFCYFNNYS 60 LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC RRNKKNKRSR SKSPVPTEKS SLPNPTNAMP 120 ELIGRFPQPF MASLQSMNRY GAGNAGVNLR EMQAQNGSHM GFQIGGQGHG SSVTAAGGGL 180 EQWRFQQFPF LNGFDSASAV SSYPFQTESV EGLVGDIAAS SRVNQLPPRV KLEYNGGLNL 240 SRSPLSVSEN SNHYYSWTDL SGLASSSASH LL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0021ss01420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423915.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
Swissprot | Q9M2U1 | 9e-43 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A0L9UNW9 | 0.0 | A0A0L9UNW9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SG88 | 0.0 | A0A0S3SG88_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150314.1 | 1e-178 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 3e-38 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
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