PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss00890.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 317aa    MW: 35958.1 Da    PI: 6.2395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss00890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-152572148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Vang0021ss00890.1 25 KGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
                       678*******************************************97 PP
2Myb_DNA-binding48.91.5e-1578121146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+el+++ +  lG++ W+ Ia++++ gRt++++k++w++
  Vang0021ss00890.1  78 RGAFSPQEEELIIHFHSFLGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                        89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0212072IPR017930Myb domain
SuperFamilySSF466891.95E-2723119IPR009057Homeodomain-like
SMARTSM007175.5E-102474IPR001005SANT/Myb domain
PfamPF002491.6E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-232679IPR009057Homeodomain-like
CDDcd001671.64E-82872No hitNo description
PROSITE profilePS5129423.81873127IPR017930Myb domain
SMARTSM007177.2E-1577125IPR001005SANT/Myb domain
PfamPF002493.5E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2580128IPR009057Homeodomain-like
CDDcd001672.01E-1080120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
LCRYQSSRRM RKPELCSGKD SKFRKGLWSP EEDEKLMNYM LNNGQGCWSD VARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEELII HFHSFLGNRW SQIAARLPGR TDNEIKNFWN  120
STIKKRLKNM STTTASTSPN SSETSSEPSN KDLNMGGFMP TQHHQHATFV PVFGSSPTQS  180
MQTTVFNTMI ERLDHELNMP HVGEYLEGTG PCFSQNEAHN KSSYLENGVF GSVNIGIEGD  240
MFVPPLENLN TSNNHNLSST CKSYFDDINS ILNNCNIGIS SENKEGVENL FQQDAEWDFE  300
ELMKDVSSFP FVDFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26251277108B-MYB
1h8a_C1e-262512727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss00890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635231.10.0transcription factor MYB46
SwissprotQ9C6U11e-74MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A0S3SG560.0A0A0S3SG56_PHAAN; Uncharacterized protein
STRINGXP_007150366.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.18e-73myb domain protein 46
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]