PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0021ss00040.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 644aa MW: 69877.8 Da PI: 7.7265

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0021ss00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	343	380	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL +qV++WF N R + Vang0021ss00040.1 343 FEHflHPYPKDSDKVMLAKQTGLARSQVSNWFINARVR 380 664459******************************88 PP
2	BELL	116.5	1.3e-37	211	278	5	72
BELL 5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++kk+kL+++l+eV++rY+qy++q+q+v+ssFe++ag+g+ak+Yt+lAlk+iS++FrcLkdai+ qi Vang0021ss00040.1 211 VNMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQI 278 579***************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.6E-40	188	276	IPR006563	POX domain
Pfam	PF07526	8.1E-32	212	275	IPR006563	POX domain
PROSITE profile	PS50071	11.726	321	384	IPR001356	Homeobox domain
SMART	SM00389	1.3E-8	324	388	IPR001356	Homeobox domain
CDD	cd00086	7.61E-12	324	384	No hit	No description
SuperFamily	SSF46689	1.75E-16	325	392	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-28	327	391	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-17	341	380	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MATYFHGSTS EIQSSADGLQ TLYLMNPSYV PYADAPHHPT LLVNPNATNA LNLASLTHAP 60 PVSPSPNQQQ HVIHGMANIL GSGNSDEHAH SRLSLFGENI AAFHGFSGGA SSAAPRVHYN 120 LWGSGVDQPG TPSSSSGGGG FRRPSQQGLS LSLSSQQTNF RSVSGELDIA GQGHVAGTGN 180 SPTSAASTGV SGLILGSKYL KAAQELLDEV VNMKKSKLVN MLDEVEQRYR QYHHQMQIVV 240 SSFEQAAGYG AAKSYTALAL KTISKQFRCL KDAISAQIKA TSKTLGEDDC LGVKVEGSRL 300 RYVDHHLRQQ RALQQLGMIQ PNAWRPQRGL PERAVSILRA WLFEHFLHPY PKDSDKVMLA 360 KQTGLARSQV SNWFINARVR LWKPMVEEMY MEEMKDHEQA NGSENTRSKE LSKEANVAAE 420 SGGIKLDNFQ PKQDSFNNQN TSPNEISANS SMSPIGGSLQ SHSGFHLAGS SEVQTSPNKP 480 RRSEMQNSPS SILSVDMEMK HNGEHANTRE GNTKFGIERH DKDGYPLMSG NANHGGGFGA 540 FTMEDIGNRF NVSTEQLASR FHGNGVSLTL GLPHNENLSM SGTSHGFLSQ NIHLGRRLEM 600 GTSGNEFCAI NTPPSSHSGT TYESIDIQNR KRFVAQLLPD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MATYFHGSTS EIQSSADGLQ TLYLMNPSYV PYADAPHHPT LLVNPNATNA LNLASLTHAP  60
PVSPSPNQQQ HVIHGMANIL GSGNSDEHAH SRLSLFGENI AAFHGFSGGA SSAAPRVHYN  120
LWGSGVDQPG TPSSSSGGGG FRRPSQQGLS LSLSSQQTNF RSVSGELDIA GQGHVAGTGN  180
SPTSAASTGV SGLILGSKYL KAAQELLDEV VNMKKSKLVN MLDEVEQRYR QYHHQMQIVV  240
SSFEQAAGYG AAKSYTALAL KTISKQFRCL KDAISAQIKA TSKTLGEDDC LGVKVEGSRL  300
RYVDHHLRQQ RALQQLGMIQ PNAWRPQRGL PERAVSILRA WLFEHFLHPY PKDSDKVMLA  360
KQTGLARSQV SNWFINARVR LWKPMVEEMY MEEMKDHEQA NGSENTRSKE LSKEANVAAE  420
SGGIKLDNFQ PKQDSFNNQN TSPNEISANS SMSPIGGSLQ SHSGFHLAGS SEVQTSPNKP  480
RRSEMQNSPS SILSVDMEMK HNGEHANTRE GNTKFGIERH DKDGYPLMSG NANHGGGFGA  540
FTMEDIGNRF NVSTEQLASR FHGNGVSLTL GLPHNENLSM SGTSHGFLSQ NIHLGRRLEM  600
GTSGNEFCAI NTPPSSHSGT TYESIDIQNR KRFVAQLLPD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	330	387	1	58	Homeobox protein Meis1
4xrs_B	3e-16	330	387	1	58	Homeobox protein Meis1
5bng_A	4e-16	330	388	1	59	Homeobox protein Meis2
5bng_B	4e-16	330	388	1	59	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0021ss00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150022.1	0.0	hypothetical protein PHAVU_005G119300g
Swissprot	Q9SJ56	1e-117	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	V7BZE7	0.0	V7BZE7_PHAVU; Uncharacterized protein
STRING	XP_007150021.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-107	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]