PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0017s00770.1
Common NameLR48_Vigan04g190900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 342aa    MW: 37948.7 Da    PI: 6.5976
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0017s00770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-192370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lv+ ++++G g+W++ ++  g++R++k+c++rw +yl
  Vang0017s00770.1 23 KGPWTPEEDQKLVQHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 70
                      79********************************************97 PP
2Myb_DNA-binding543.7e-1776121148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++++eE++ + +++  lG++ W++Ia +++ gRt++++k++w+++l
  Vang0017s00770.1  76 RGKFSQEEEQTIMHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 121
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-261473IPR009057Homeodomain-like
PROSITE profilePS5129419.0371870IPR017930Myb domain
SuperFamilySSF466893.67E-3220117IPR009057Homeodomain-like
SMARTSM007173.9E-162272IPR001005SANT/Myb domain
PfamPF002498.8E-182370IPR001005SANT/Myb domain
CDDcd001672.73E-132570No hitNo description
PROSITE profilePS5129427.21271125IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2774126IPR009057Homeodomain-like
SMARTSM007178.8E-1675123IPR001005SANT/Myb domain
PfamPF002494.8E-1676121IPR001005SANT/Myb domain
CDDcd001678.58E-1278121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
LINLSIAQNM GRSPCCDENG LKKGPWTPEE DQKLVQHIEK HGHGSWRALP KLAGLNRCGK  60
SCRLRWTNYL RPDIKRGKFS QEEEQTIMHL HSILGNKWSA IATHLPGRTD NEIKNFWNTH  120
LKKKLIQMGF DPMTHQPRTD LVSSLPYLLA LANMTDLMDH QSLDEHAMML QAEAVQLAKL  180
QYLHYLIQSS NSLSSNHYDQ NATTSNIEPF TLLNSISNVK ENPVMLQPDA PASFSHGIAS  240
SQPLHHPNVL PQLIDPQVSF SSQSCLNSEM GQGTNFAMVS QGDHTVDHDS SWTIPSIPPN  300
AIGTLANNPG DASSSTSSYG GGPQSYWPEL FFEDPIMHVL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31211255108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0017s00770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421432.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z21e-120MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0L9UG720.0A0A0L9UG72_PHAAN; Uncharacterized protein
STRINGGLYMA04G11040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-122myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]