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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0013ss01250.1 | ||||||||
Common Name | LR48_Vigan08g122700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 28347.9 Da PI: 5.349 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G+g+W++ ++ g+ R++k+c++rw +yl Vang0013ss01250.1 14 KGPWTPEEDLKLIKYIQTHGPGNWRSLPKSAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.362 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.6E-23 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.34E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-8 | 65 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRAPCCDKN GLKKGPWTPE EDLKLIKYIQ THGPGNWRSL PKSAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SLEEEDTIIQ LHSIMGNKTV LNPSLNMQGF LGGAQVLINQ GLLNLAATAS 120 LLENQNLASH NYVQNQVAQP LDITQLQSLE GFSGTVENFS CSNSPSGDEN LVLQQNQVDL 180 LGNHVFAHSM KNAELKKGYD SAMPTPESSP NQLNSSSNYL RSGREEEKNS FCSDLFEFDI 240 PEGLDIADIF CTVPEC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-15 | 12 | 88 | 25 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0013ss01250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432004.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
TrEMBL | A0A0L9V5R2 | 0.0 | A0A0L9V5R2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SBP0 | 0.0 | A0A0S3SBP0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132622.1 | 1e-152 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 4e-55 | myb domain protein 41 |
Publications ? help Back to Top | |||
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