PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 164aa MW: 18710.1 Da PI: 6.0112

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0013ss01170.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l +v+ +G +W+ ++ g+ R++k+c++rw++yl Vang0013ss01170.1 14 KGAWSREEDDKLRAYVHTYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-22	8	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.432	9	65	IPR017930	Myb domain
SMART	SM00717	1.3E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.79E-23	15	88	IPR009057	Homeodomain-like
CDD	cd00167	2.83E-11	16	61	No hit	No description
PROSITE profile	PS50090	4.495	62	106	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.3E-10	64	95	IPR009057	Homeodomain-like
SMART	SM00717	60	66	107	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MVRTPFYDKN GVKKGAWSRE EDDKLRAYVH TYGHSNWRQL PKFAGLARCG KSCRLRWLNY 60 LRPNLKHGNY TPEEEEIIIR LHQQFGNSSL AISAETPEGD NYTLITGAEE DGVPPLLSYK 120 EFSGDFWSEP FLLEDTIHTF KDDICTGKGM ALLIPNFDAA YFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-13	14	97	7	89	B-MYB
1h8a_C	4e-13	14	97	27	109	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269\|PubMed:24415840}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0013ss01170.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:24415840}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-126	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014523889.1	3e-75	transcription factor MYB14-like
Swissprot	Q9SJX8	1e-38	MYB14_ARATH; Transcription factor MYB14
TrEMBL	A0A1S3W0T6	7e-74	A0A1S3W0T6_VIGRR; transcription factor MYB14-like
STRING	XP_007132613.1	2e-64	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF356	33	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	6e-41	myb domain protein 14

Publications ? help Back to Top
Chen Y, et al. AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 2013. 31: p. 87-97 [PMID:24415840]