PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0013ss01090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29305.7 Da PI: 6.5809 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.3e-09 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEd +l+ +v+ +G ++W+ ++ g Vang0013ss01090.1 14 KGTWTPEEDWKLISYVTTHGHKNWRQLPKFAG 45 799**********************9999888 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.7e-16 | 88 | 132 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE+e+++++++ +G++ W+ I ++++ gR+++++k++w+ + Vang0013ss01090.1 88 RGNYTYEEEEIIIKLHQIHGNR-WSVIVSHLP-GRSDNEIKNHWHAH 132 899*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.762 | 9 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.89E-26 | 11 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-9 | 13 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-11 | 14 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.35E-7 | 16 | 82 | No hit | No description |
PROSITE profile | PS51294 | 22.723 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-16 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 88 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.03E-11 | 90 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVRTPYCDNN GLRKGTWTPE EDWKLISYVT THGHKNWRQL PKFAGEFKNS TYLKNLNKFF 60 ISMFSGLSRC GKSCRLRWMN YLRPGIKRGN YTYEEEEIII KLHQIHGNRW SVIVSHLPGR 120 SDNEIKNHWH AHLKKRFQHN SETNEKIEAS TSKQHSLVES IQEESGEVVA SSFQNSCLAT 180 SQTPDSDSPS PQHTSLRDAL CMISELEPEA ASNGNLATDN FADFMEQNTD PISAYSWEEL 240 YEISYLCEFL APSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 12 | 137 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0013ss01090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432008.1 | 1e-172 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A0L9V5U4 | 1e-171 | A0A0L9V5U4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132609.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 5e-55 | myb domain protein 15 |