PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss03280.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 75aa    MW: 8830.83 Da    PI: 8.9088
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss03280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP36.11.7e-11531228
                       -SSTT-----TT--HHHHHTT--HHHH CS
                SBP  2 CqvegCeadlseakeyhrrhkvCevhs 28
                       Cqv++C+adlseak+yhrrhk+ e+  
  Vang0010ss03280.1  5 CQVDNCDADLSEAKQYHRRHKIAETNF 31
                       **********************99764 PP
2SBP48.62.1e-1539694878
                       SEEETTT--SS--S-STTTT-------S--- CS
                SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                       rfhelsefDe+krsCr+rL +hnerrrk++ 
  Vang0010ss03280.1 39 RFHELSEFDESKRSCRTRLVGHNERRRKNAV 69
                       9***************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114119.461267IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.3E-14254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-24371IPR004333Transcription factor, SBP-box
PfamPF031109.7E-15566IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MPPSCQVDNC DADLSEAKQY HRRHKIAETN FSSKILFFRF HELSEFDESK RSCRTRLVGH  60
NERRRKNAVD YRGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-215661184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss03280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150344e-79AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433049.14e-36PREDICTED: squamosa promoter-binding protein 1
RefseqXP_017433059.14e-36PREDICTED: squamosa promoter-binding protein 1
SwissprotQ387419e-22SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0L9TKE74e-35A0A0L9TKE7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QZC81e-34A0A0S3QZC8_PHAAN; Squamosa promoter-binding-like protein
STRINGGLYMA07G31880.12e-32(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.23e-23squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]