PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0010ss02220.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21543.8 Da PI: 4.4799 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.3e-10 | 15 | 39 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Iar+++ gRt++++k++w++++ Vang0010ss02220.2 15 RWSRIARKLP-GRTDNEIKNFWRTFM 39 5*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.618 | 1 | 43 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-7 | 10 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-7 | 15 | 37 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.00E-7 | 15 | 39 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-11 | 15 | 40 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
LVTSIALLTF MVPCRWSRIA RKLPGRTDNE IKNFWRTFMR KKKALEKKRA SPSSSSSSSS 60 LSSINHAVDS HASKEVGEES FYDTGGYGYD DVTGLISAGE EFSLDDIWKD IVLSEDDTIQ 120 QQPLYELQSQ EGCNFSSPPA MIYSPSSSWE YNSSHPLWVM DEEESSKMLF PASSDQYYYS 180 CYEQGNAFLT G* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0010ss02220.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411400.1 | 1e-127 | PREDICTED: transcription factor MYB59-like | ||||
TrEMBL | A0A0S3SCV2 | 1e-127 | A0A0S3SCV2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132104.1 | 4e-81 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46130.2 | 8e-16 | myb domain protein 48 |