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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0010ss02220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 24522.3 Da PI: 4.5243 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lv v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Vang0010ss02220.1 42 RGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 89 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 35 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.401 | 37 | 93 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-16 | 41 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 42 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.34E-21 | 43 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-12 | 44 | 89 | No hit | No description |
PROSITE profile | PS50090 | 4.623 | 90 | 130 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-6 | 93 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
LATEKLTMNE HACTTWTGGR IRKLSSEELE EEKKMVQEEM RRGPWTEEED LKLVYFVNMF 60 GDRRWDFIAK VSGLNRTGKS CRLRWVNYLH PDLKRGKLTS QEEHLVMELH SKWGNSAGEE 120 FSLDDIWKDI VLSEDDTIQQ QPLYELQSQE GCNFSSPPAM IYSPSSSWEY NSSHPLWVMD 180 EEESSKMLFP ASSDQYYYSC YEQGNAFLTG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-15 | 33 | 123 | 49 | 138 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-15 | 33 | 123 | 49 | 138 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0010ss02220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-160 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411400.1 | 2e-62 | PREDICTED: transcription factor MYB59-like | ||||
TrEMBL | A0A0L9TJQ4 | 4e-61 | A0A0L9TJQ4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA11G15180.6 | 2e-45 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-45 | myb domain protein 59 |