PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0010ss01650.1

Common Name

LR48_Vigan238s001800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 277aa MW: 30182.8 Da PI: 9.9586

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0010ss01650.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	48	108	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Vang0010ss01650.1 48 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 108 57889*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-33	32	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-33	51	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
LNTMVFSSIP VFVDPPNWHQ QTHVGASVGS IRPGSMADRA RLAKIPPPEA ALKCPRCEST 60 NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRNKKNKRS RSKSPASSDK 120 QTLSGSSGAL PSGGNTHELI GQLPQPPNLP FMASLQNLNR YAVGNMGLGL REIHGQNDHM 180 GFQIGGSGNS STGGGMDQWR LQQIPFFNGF ESASAGSYHF QNESIETPSG LVGDLASNSR 240 VSQMPSVKME ESGALNLSRS PLNVSENNHY YSWTDMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0010ss01650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027910765.1	0.0	dof zinc finger protein DOF3.6-like
Swissprot	Q9M2U1	2e-55	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	A0A0L9T6G2	0.0	A0A0L9T6G2_PHAAN; Uncharacterized protein
STRING	XP_007132074.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-44	OBF-binding protein 3

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]