PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01200.8 | ||||||||
Common Name | LR48_Vigan06g129600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | RAV | ||||||||
Protein Properties | Length: 348aa MW: 37994.8 Da PI: 9.8129 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 6e-14 | 30 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Vang0005s01200.8 30 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 78 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 99.2 | 2.5e-31 | 164 | 268 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++ Vang0005s01200.8 164 FEKAVTPSDVGKLNRLVIPKQHAEKHfplhsangvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHR 256 89****************************998886667799**************************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + Vang0005s01200.8 257 STGPDKQLYIDW 268 766777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.81E-17 | 30 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.6E-9 | 30 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-25 | 30 | 88 | No hit | No description |
SMART | SM00380 | 1.0E-28 | 31 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-20 | 31 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 31 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-40 | 159 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-30 | 162 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.53E-28 | 163 | 257 | No hit | No description |
PROSITE profile | PS50863 | 13.507 | 164 | 272 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-25 | 164 | 272 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-28 | 164 | 269 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
LCRVGSGASA IVDPDGGGNT EVESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN 60 EEDEAARAYD IAAQRFRGKD AVTNFKPVSG GAGEGDDEDG EAEFLNSHSK SEIVDMLRKH 120 TYNDELEQSK RSRGVVRRRG GAAAAGNGNS IAGACFVKAR EQLFEKAVTP SDVGKLNRLV 180 IPKQHAEKHF PLHSANGVSA TAAKGVLLNF EDVAGKVWRF RYSYWNSSQS YVLTKGWSRF 240 VKEKNLKAGD TVCFHRSTGP DKQLYIDWKA RNNNVNEVGL FGPVGPVVEP IQMVRLFGVN 300 ILKLPGSEPN GNNNASGTIP GFCNGKRREM ELFSLECSKK PKIIGAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 8e-58 | 161 | 272 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01200.8 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426030.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
Swissprot | Q9C6M5 | 1e-140 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A0L9UT17 | 0.0 | A0A0L9UT17_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T2B3 | 0.0 | A0A0S3T2B3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154354.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-134 | RAV family protein |