PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01200.7 | ||||||||
Common Name | LR48_Vigan06g129600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | RAV | ||||||||
Protein Properties | Length: 391aa MW: 42487.8 Da PI: 8.9462 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.6 | 7.2e-14 | 73 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Vang0005s01200.7 73 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 121 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 98.9 | 3.2e-31 | 207 | 311 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++ Vang0005s01200.7 207 FEKAVTPSDVGKLNRLVIPKQHAEKHfplhsangvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHR 299 89****************************998886667799**************************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + Vang0005s01200.7 300 STGPDKQLYIDW 311 766777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.0E-9 | 73 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-17 | 73 | 129 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.41E-26 | 73 | 131 | No hit | No description |
SMART | SM00380 | 1.0E-28 | 74 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 74 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-20 | 74 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-40 | 202 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-30 | 205 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-28 | 206 | 300 | No hit | No description |
PROSITE profile | PS50863 | 13.507 | 207 | 315 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-25 | 207 | 315 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-28 | 207 | 312 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MDCMDESTTT ESLSISLSPT VSSEDKLLLL SSNNPSPPPP STTLCRVGSG ASAIVDPDGG 60 GNTEVESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDIAAQRFR 120 GKDAVTNFKP VSGGAGEGDD EDGEAEFLNS HSKSEIVDML RKHTYNDELE QSKRSRGVVR 180 RRGGAAAAGN GNSIAGACFV KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLHSANG 240 VSATAAKGVL LNFEDVAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDTVCFHRS 300 TGPDKQLYID WKARNNNVNE VGLFGPVGPV VEPIQMVRLF GVNILKLPGS EPNGNNNASG 360 TIPGFCNGKR REMELFSLEC SKKPKIIGAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-57 | 204 | 315 | 11 | 118 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01200.7 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426030.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
Swissprot | Q9C6M5 | 1e-146 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A0L9UT17 | 0.0 | A0A0L9UT17_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T2B3 | 0.0 | A0A0S3T2B3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154354.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-133 | RAV family protein |