PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s01200.7
Common NameLR48_Vigan06g129600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family RAV
Protein Properties Length: 391aa    MW: 42487.8 Da    PI: 8.9462
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s01200.7genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.2e-1473121155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Vang0005s01200.7  73 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 121
                       89****9888.8*********3.....5**********99*************98 PP
2B398.93.2e-31207311196
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h         +   ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++
  Vang0005s01200.7 207 FEKAVTPSDVGKLNRLVIPKQHAEKHfplhsangvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHR 299
                       89****************************998886667799**************************************************8 PP

                       -SSSEE..EEEE CS
                B3  85 dgrsefelvvkv 96 
                       +   +++l++ +
  Vang0005s01200.7 300 STGPDKQLYIDW 311
                       766777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-973121IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1773129IPR016177DNA-binding domain
CDDcd000187.41E-2673131No hitNo description
SMARTSM003801.0E-2874135IPR001471AP2/ERF domain
PROSITE profilePS5103220.15274129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2074129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.6E-40202316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-30205310IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-28206300No hitNo description
PROSITE profilePS5086313.507207315IPR003340B3 DNA binding domain
SMARTSM010193.5E-25207315IPR003340B3 DNA binding domain
PfamPF023622.8E-28207312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDCMDESTTT ESLSISLSPT VSSEDKLLLL SSNNPSPPPP STTLCRVGSG ASAIVDPDGG  60
GNTEVESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDIAAQRFR  120
GKDAVTNFKP VSGGAGEGDD EDGEAEFLNS HSKSEIVDML RKHTYNDELE QSKRSRGVVR  180
RRGGAAAAGN GNSIAGACFV KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLHSANG  240
VSATAAKGVL LNFEDVAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDTVCFHRS  300
TGPDKQLYID WKARNNNVNE VGLFGPVGPV VEPIQMVRLF GVNILKLPGS EPNGNNNASG  360
TIPGFCNGKR REMELFSLEC SKKPKIIGAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5720431511118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0005s01200.7
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426030.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1
SwissprotQ9C6M51e-146RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A0L9UT170.0A0A0L9UT17_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2B30.0A0A0S3T2B3_PHAAN; Uncharacterized protein
STRINGXP_007154354.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-133RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  7. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]