PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01200.3 | ||||||||
Common Name | LR48_Vigan06g129600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | RAV | ||||||||
Protein Properties | Length: 259aa MW: 28473.4 Da PI: 9.9121 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.3 | 3.2e-12 | 30 | 73 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a Vang0005s01200.3 30 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAQ 73 89****9888.8*********3.....5**********99*******985 PP | |||||||
2 | B3 | 100.1 | 1.4e-31 | 75 | 179 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++ Vang0005s01200.3 75 FEKAVTPSDVGKLNRLVIPKQHAEKHfplhsangvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHR 167 89****************************998886667799**************************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + Vang0005s01200.3 168 STGPDKQLYIDW 179 766777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.06E-18 | 30 | 72 | No hit | No description |
Pfam | PF00847 | 8.9E-8 | 30 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-12 | 30 | 74 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.12 | 31 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-15 | 31 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-15 | 31 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-5 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-5 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-40 | 73 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.84E-30 | 74 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-28 | 74 | 168 | No hit | No description |
PROSITE profile | PS50863 | 13.507 | 75 | 183 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-28 | 75 | 180 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-25 | 75 | 183 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
LCRVGSGASA IVDPDGGGNT EVESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN 60 EEDEAARAYD IAQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLHSANGVS ATAAKGVLLN 120 FEDVAGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DTVCFHRSTG PDKQLYIDWK 180 ARNNNVNEVG LFGPVGPVVE PIQMVRLFGV NILKLPGSEP NGNNNASGTI PGFCNGKRRE 240 MELFSLECSK KPKIIGAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-58 | 74 | 183 | 13 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01200.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426030.1 | 1e-134 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
Swissprot | Q9C6M5 | 1e-69 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A0L9UT17 | 1e-133 | A0A0L9UT17_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T2B3 | 1e-133 | A0A0S3T2B3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154354.1 | 1e-123 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 5e-72 | RAV family protein |