PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0005s01200.2 | ||||||||
Common Name | LR48_Vigan06g129600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | RAV | ||||||||
Protein Properties | Length: 275aa MW: 30049.2 Da PI: 9.9037 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.3 | 6.8e-12 | 30 | 72 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a Vang0005s01200.2 30 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIA 72 89****9888.8*********3.....5**********99*******87 PP | |||||||
2 | B3 | 99.9 | 1.5e-31 | 91 | 195 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++ Vang0005s01200.2 91 FEKAVTPSDVGKLNRLVIPKQHAEKHfplhsangvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHR 183 89****************************998886667799**************************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + Vang0005s01200.2 184 STGPDKQLYIDW 195 766777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.72E-18 | 30 | 72 | No hit | No description |
SuperFamily | SSF54171 | 4.18E-12 | 30 | 72 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-7 | 30 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-13 | 31 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.501 | 31 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-14 | 31 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-5 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-5 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-40 | 86 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-30 | 89 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.51E-29 | 90 | 184 | No hit | No description |
PROSITE profile | PS50863 | 13.507 | 91 | 199 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-25 | 91 | 199 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-28 | 91 | 196 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
LCRVGSGASA IVDPDGGGNT EVESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN 60 EEDEAARAYD IAGNGNSIAG ACFVKAREQL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLH 120 SANGVSATAA KGVLLNFEDV AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLKAGDTVC 180 FHRSTGPDKQ LYIDWKARNN NVNEVGLFGP VGPVVEPIQM VRLFGVNILK LPGSEPNGNN 240 NASGTIPGFC NGKRREMELF SLECSKKPKI IGAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-58 | 88 | 199 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0005s01200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521390.1 | 1e-143 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9LS06 | 5e-77 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | A0A1S3VSV9 | 1e-142 | A0A1S3VSV9_VIGRR; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
STRING | XP_007154354.1 | 1e-133 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 2e-79 | ethylene response DNA binding factor 3 |
Publications ? help Back to Top | |||
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