PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 206aa MW: 23349.3 Da PI: 7.6611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0005s01170.4	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	25	44	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Vang0005s01170.4 25 FSCTVCNKMFNRFNNMQMHM 44 89*****************9 PP
2	zf-C2H2	14.6	9.8e-05	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Vang0005s01170.4 110 FGCRKCGKPFAVRGDWRTHEKNC 132 56*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.08E-5	22	49	No hit	No description
PROSITE profile	PS50157	9.889	25	52	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-5	25	44	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.89E-6	93	130	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	96	130	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0010305	Biological Process	leaf vascular tissue pattern formation
GO:0010588	Biological Process	cotyledon vascular tissue pattern formation
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
LASAPTQGQY WIPSPAQILI GPTQFSCTVC NKMFNRFNNM QMHMWGHGSQ YRKGPESLRG 60 AKPASSMLRL PCYCCAEGCK NNIDHPRSRP LKDFRTLQTH YKRKHGAKPF GCRKCGKPFA 120 VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHVRAFGDG HAPHTVESCD QIGEDDLFGD 180 EDEEELDLED DDEGYNSNEV VFGFN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269\|PubMed:18643975, ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0005s01170.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017426956.1	1e-156	PREDICTED: zinc finger protein WIP6
Swissprot	Q9FX68	1e-108	ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBL	A0A0L9UTT8	1e-155	A0A0L9UTT8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T1T2	1e-155	A0A0S3T1T2_PHAAN; Uncharacterized protein
STRING	XP_007153349.1	1e-136	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-110	C2H2-like zinc finger protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]