PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vang0005s01160.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 280aa MW: 30719.6 Da PI: 10.5214

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0005s01160.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.2e-32	120	175	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQk+Rl+ Vang0005s01160.1 120 KQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLH 175 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.094	117	177	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	117	178	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-18	117	178	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-27	120	175	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-7	122	172	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MLPRKMGFRE YIEALEEERR KIQVFPKELP LSSVQLWNSN PPPTKEDVPR KANVVEVKRN 60 GGAFQPFQRE EKSAIVNGKA DNYASAIGKT PSSPPVPATS STGPITIDSR KEEKGQTQRK 120 QRRCWSQELH KRFLHALQQL GGADSATPKQ IRELMKVDGL TNDEVKSHLQ KFRLHTRRSP 180 IIHNNGNSQA APLFLVGKIF VQPPEYGAVA TSTASGGELT TVTAPTGIYA PVAAHPPLVT 240 NTPIMNHSRS QERPNYNNNN SAQSNSPASS SSTHTITTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0005s01160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017426139.1	0.0	PREDICTED: myb family transcription factor EFM-like
TrEMBL	A0A0L9UT12	0.0	A0A0L9UT12_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T190	0.0	A0A0S3T190_PHAAN; Uncharacterized protein
STRING	XP_007153350.1	1e-148	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	3e-47	G2-like family protein