PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s00190.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 306aa    MW: 33730.5 Da    PI: 6.5114
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s00190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33157214259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Vang0005s00190.1 157 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 214
                       8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33143215IPR003657WRKY domain
SuperFamilySSF1182903.27E-28148214IPR003657WRKY domain
PROSITE profilePS5081129.712151216IPR003657WRKY domain
SMARTSM007743.2E-38156215IPR003657WRKY domain
PfamPF031061.0E-25157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEDKDRATSD PAAVEFAGDT SWTFATDGSD AAYLFSGYGE RSVLREFGWN LEPDQLNRIG  60
TDDGLWMPVQ SSLTCSIEPA AAASLRSNNQ SVSSSSSEDQ PEKSTVSDEK PPETPIDDGQ  120
KYKICSWFRI KGKKKGQKRI RLPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY  180
RCTNSKCTVK KRVERSSEDP TIVITTYEGQ HCHHTVGFPR GGIICHEAAA FAGQLAPMSQ  240
FYYPIHSPRE TNNINTLSSI SPPCQAQDDA SGGSNTVMPA DASSLQPPTD EGLLGDIVPP  300
GMRIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25146213774Probable WRKY transcription factor 4
2lex_A1e-25146213774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0005s00190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437014.10.0PREDICTED: probable WRKY transcription factor 57
TrEMBLA0A0S3T1P70.0A0A0S3T1P7_PHAAN; Uncharacterized protein
STRINGXP_007157586.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.29e-60WRKY DNA-binding protein 57