PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 452aa MW: 50048.6 Da PI: 8.8547

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0005s00080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	396	418	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F++ L H r+H Vang0005s00080.1 396 HECPICNKIFRSGQALGGHKRSH 418 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.41E-6	7	35	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-4	8	33	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.138	11	38	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.5E-6	11	34	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	11	33	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	13	33	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.39	58	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.9	58	80	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.38E-8	59	80	No hit	No description
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.0E-5	60	82	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.38E-8	391	418	No hit	No description
Pfam	PF13912	2.0E-11	395	418	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.702	396	418	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	396	418	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	398	418	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MSYQSMEERK FVCKYCSKRF PCGKSLGGHI RTHMMSENSA LGNAERSNAT NGILQLEKFC 60 KECGKGFLSL KALCGHMACH SEKDKGGNRF ESSSSGFAEK QKLAMDSQSD TETSTPRRSK 120 RKRFKTLSNS NNQAQSSVSE VEQGQEEVAR CLMMLSKDSS YKGRFSLFTE SSDNNSVVLE 180 VKSPSPDTKV TMMNSDGKNF VSGAYVEKKL EQSKEFKYAE VGYDSDNSDS GYFRYGPKEV 240 DSTDSNNGNF KNEVQSSKVG CFSGFEDYDV ESRKVPSRSV EFKKFVVENW ENDRQDGGAA 300 RKFDSKKSKK PNYDSLGQNL VRVSSRKMGN GSANDKVNKY ECLTSERDNG YDDSAYESDE 360 NSTDSDSYPA PKAYSKRNLS GQKGKKKLKS KKSKAHECPI CNKIFRSGQA LGGHKRSHFI 420 GGSEENTLVI RPGAAAVPCL IDLNLPAPVD E*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MSYQSMEERK FVCKYCSKRF PCGKSLGGHI RTHMMSENSA LGNAERSNAT NGILQLEKFC  60
KECGKGFLSL KALCGHMACH SEKDKGGNRF ESSSSGFAEK QKLAMDSQSD TETSTPRRSK  120
RKRFKTLSNS NNQAQSSVSE VEQGQEEVAR CLMMLSKDSS YKGRFSLFTE SSDNNSVVLE  180
VKSPSPDTKV TMMNSDGKNF VSGAYVEKKL EQSKEFKYAE VGYDSDNSDS GYFRYGPKEV  240
DSTDSNNGNF KNEVQSSKVG CFSGFEDYDV ESRKVPSRSV EFKKFVVENW ENDRQDGGAA  300
RKFDSKKSKK PNYDSLGQNL VRVSSRKMGN GSANDKVNKY ECLTSERDNG YDDSAYESDE  360
NSTDSDSYPA PKAYSKRNLS GQKGKKKLKS KKSKAHECPI CNKIFRSGQA LGGHKRSHFI  420
GGSEENTLVI RPGAAAVPCL IDLNLPAPVD E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	RRSKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0005s00080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435467.1	0.0	PREDICTED: dentin sialophosphoprotein-like
TrEMBL	A0A0L9VDH7	0.0	A0A0L9VDH7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T1U5	0.0	A0A0S3T1U5_PHAAN; Uncharacterized protein
STRING	XP_007157592.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1101	30	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-75	C2H2-like zinc finger protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]