PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00370.1
Common NameLR48_Vigan06g149400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 430aa    MW: 48576.8 Da    PI: 8.8811
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-1416911798
                       E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       ++p  f++++g +   s+  tl+ ++g  W++ l  +k ++++++ +GW++Fv+   + +g f+vF+++g+s+f   v++f+
  Vang0004ss00370.1 16 RIPDIFLRKYGTQ--LSTVATLTVPDGSIWRIGL--KKADSKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSF--IVHIFN 91
                       69********966..9999***************..*************************************9..999986 PP
2B357.32.9e-18296387499
                        E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l v
  Vang0004ss00370.1 296 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRIKEVVLQV 382
                        78899******************876743...59999999********665555..66***********************98879999999 PP

                        EEE-S CS
                 B3  95 kvfrk 99 
                        +vfr 
  Vang0004ss00370.1 383 TVFRV 387
                        99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.4E-8193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-171492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-191492IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-121691IPR003340B3 DNA binding domain
CDDcd100171.70E-141691No hitNo description
PROSITE profilePS5086311.6741793IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-24285386IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24286387IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-21291386No hitNo description
SMARTSM010192.7E-18293388IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93293388IPR003340B3 DNA binding domain
PfamPF023624.7E-16296386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
LFRSIGNLTF IFAFQRIPDI FLRKYGTQLS TVATLTVPDG SIWRIGLKKA DSKIWFVDGW  60
QDFVQRYSIG VGYFLVFMYE GNSSFIVHIF NLSTSEINYQ SAMRNHMEGP CFVNYNHIFE  120
EMEDIDSIDL SDLSPSYLTS GAMQNKGFAG SVDQLTPGKS HTPALQNLFN GGSKLNRVNW  180
GDGGSSYSSK SANSQGSQST RDIGVQFNAV EFKRSTDELK LRYSNEEAVN KTAKKKRKSE  240
SQGEEPSGEN EEEAEMRYRF YESASARKRT VTAEERERAI NASKAFEPTN PFCRVVLRPS  300
YLYRGCIMYL PSCFAEKNLN GVSGFIKLQL SNGRQWSVRC LYRGGRAKLS QGWFEFTVEN  360
NLGEGDVCVF ELLRIKEVVL QVTVFRVTED ASLLNSPPVQ QLSQNMSHTK LLNPHLQHRV  420
SSTVKLIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-7125938915144B3 domain-containing transcription factor VRN1
4i1k_B4e-7125938915144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427777.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
SwissprotQ8L3W11e-119VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0L9UTV90.0A0A0L9UTV9_PHAAN; Uncharacterized protein (Fragment)
TrEMBLA0A0S3T1K00.0A0A0S3T1K0_PHAAN; Uncharacterized protein
STRINGXP_007153153.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-113B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]