PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0002ss01900.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BES1
Protein Properties Length: 661aa    MW: 74818.4 Da    PI: 6.4024
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0002ss01900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822159.32.6e-49551992142
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                        ++g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvv++DGttyr+ + p+   +++gs+a +s+es+
  Vang0002ss01900.1  55 AKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQ-CPPP---SHMGSFAAKSVESQ 142
                        689******************************************************************5.4444...69************ PP

             DUF822  94 lq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsv 142
                        l+  sl++++++  +e++ ++++ ++ +sp+s+ds+ +a+        ++ +p+ +v
  Vang0002ss01900.1 143 LSgGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERdsknekyTNASPINTV 199
                        **9***********************************9886665555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-5056202IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.79E-152220657IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.7E-163223656IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.7E-79243621IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53260274IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53281299IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53303324IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53396418IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53472491IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53506522IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53523534IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53541564IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.1E-53579601IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MKSINDDGST QDLDPQSDHS SDYLTHPNSN PQPHPHPRRP RGFAAAAAVT TNSVAKGKKE  60
REKEKERTKL RERHRRAITS RMLAGLRQYG NFPLPARADM NDVLAALARE AGWVVDADGT  120
TYRQCPPPSH MGSFAAKSVE SQLSGGSLRN CSVKETIENQ TSVLRIDECL SPASIDSVVI  180
AERDSKNEKY TNASPINTVD CLEADQLMQD IHSGVHENDF TGTPYVPVYV KLPAGIINKF  240
CQLIDPEGIK QELMHMKSLN VDGVVVDCWW GIVEGWSPQK YVWSGYRELF NIVRKFKLKL  300
QVVMAFHECG GNDSSDALIS LPQWVLDIGK DNQDIFFTDR EGRRNTECLS WGIDKERVLK  360
GRTGIEVYFD MMRSFRTEFD DLFAEGLISA VEVGLGASGE LKYPSFSERM GWSSPVCRLI  420
FYGQCYDKYL QHSLRRAAKL RGHSFWARGP DNAGHYNSMP HETGFFCERG DYDNYYGRFF  480
LHWYSQTLID HADNVLSLAT LAFEETKIIV KVPAVYWWYK TPSHAAELTA GYHNPTNQDG  540
YFPVFEVLRK HAVTMKFVCL GFHLSSQEAN ESLIDPEGLS WQVLNSAWDR GLMAGGENAL  600
LCYDREGYKR LVDTAKPRND PDHRHFSFFV YQQPSLLQAN VCLSDLDFFV KCMHGEMTDL  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-12122561811401BETA-AMYLASE
1byb_A1e-12122561811401BETA-AMYLASE
1byc_A1e-12122561811401BETA-AMYLASE
1byd_A1e-12122561811401BETA-AMYLASE
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0002ss01900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427383.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S3VRD40.0A0A1S3VRD4_VIGRR; Beta-amylase
STRINGXP_007158095.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]