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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0002ss01390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 285aa MW: 32195.4 Da PI: 6.7065 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 42.5 | 1.1e-13 | 68 | 92 | 1 | 25 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegk 25 d+epgrCrRtDGKkWRCsr++ +++ Vang0002ss01390.1 68 DPEPGRCRRTDGKKWRCSRDAHPDS 92 79********************997 PP | |||||||
2 | QLQ | 58.1 | 2.7e-20 | 14 | 49 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ+++L++Q+l++KyL a++ vPp+Ll++i+k Vang0002ss01390.1 14 PFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRK 49 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.5E-12 | 13 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-15 | 14 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.693 | 14 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 13.056 | 68 | 112 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.2E-10 | 69 | 92 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSVPPPSTAA MWTPFTAAQW HELEHQALIF KYLKAGLSVP PDLLLPIRKS LQFMAHPSLG 60 GYYGKKIDPE PGRCRRTDGK KWRCSRDAHP DSNATTATPT LPHLHMDPLT LSGDNTKKTY 120 RCCSLLLNIC EVLDFLVTMF WMFSEIMRWG FRFGLNSEAD EHVLQKDLGS VRYQGYDFTS 180 DSMWSHMSPI PSSTVSESRS GSTMLGNCFQ QQTMRDAELL NLETARTKDL IFSSQLSSAG 240 SLKQEYQSPQ SLFSDWDWKK DLSSSAIEYR PNKDFNCNPD ANVD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0002ss01390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028247418.1 | 1e-142 | growth-regulating factor 3-like | ||||
TrEMBL | A0A445J438 | 1e-140 | A0A445J438_GLYSO; Growth-regulating factor 3 | ||||
STRING | AES95580 | 1e-101 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14948 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-29 | growth-regulating factor 5 |