PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7DS_76515C538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 45aa MW: 5144.93 Da PI: 10.8336 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 1 | 23 | 25 | 48 |
HHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 25 ktIartmgkgRtlkqcksrwqkyl 48 ++Ia +++ gRt++++k++w+++l Traes_7DS_76515C538.1 1 SSIATKLP-GRTDNEIKNYWNTHL 23 58******.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.42E-6 | 1 | 23 | No hit | No description |
Pfam | PF00249 | 2.7E-6 | 1 | 23 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-12 | 1 | 24 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.158 | 1 | 27 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.5E-7 | 2 | 29 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 45 aa Download sequence Send to blast |
SSIATKLPGR TDNEIKNYWN THLRKKLLGM GIDPVTHRPR TDLSL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF057260 | 5e-40 | EF057260.1 Panicum virgatum microsatellite PVSSR146 and microsatellite PVSSR147 sequences. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229990.1 | 2e-24 | transcription factor MYB93 | ||||
Swissprot | Q9SBF3 | 9e-19 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | M7ZPE6 | 2e-23 | M7ZPE6_TRIUA; Transcription factor MYB39 | ||||
STRING | BRADI1G51747.1 | 7e-24 | (Brachypodium distachyon) | ||||
STRING | Traes_7DS_76515C538.1 | 2e-25 | (Triticum aestivum) | ||||
STRING | TRIUR3_17295-P1 | 3e-24 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 5e-23 | myb domain protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|