PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 810aa MW: 89483.7 Da PI: 8.2764

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_3880F0FD0.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.6	1.5e-37	80	155	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC+adls+ ++yhrrhkvCe h+k++ v ++++e+rfCqqCsrfh ++efDe+k+sCr+rLa+hn+rrrk+ Traes_7DS_3880F0FD0.1 80 CQVDGCHADLSDDRDYHRRHKVCEPHTKSTLVRIKNIEHRFCQQCSRFHLVQEFDEGKKSCRSRLATHNRRRRKAP 155 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-31	72	141	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.513	77	154	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.98E-35	78	157	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-28	80	153	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.33E-5	551	696	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	8.5E-5	551	696	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
PSGCGSRELG RAGEGCSFGA AADKSRRRRR RRVTTVDNPE ECSNTAIHNE RNAVWRGQIG 60 EEEGPASATA GASSSSAPSC QVDGCHADLS DDRDYHRRHK VCEPHTKSTL VRIKNIEHRF 120 CQQCSRFHLV QEFDEGKKSC RSRLATHNRR RRKAPAEAVN SLGENQSLTN TLLLLLRQLA 180 GQDSASSSEQ INGPNLLVSL LKNLAAVAGT QACQDMLKDA TSSNAGNYVG NQSGPPVPAE 240 EPPVKRRAQN FDLNDAYVEE DESRTDKIVF KLFGKQPNDF PADLRAQILN WLSHYPSDME 300 SYIRPGCVIL TIYLRLPNWM WGKINVDPAP WIENLISIST HGFWETGWLY ARVQDRLTLS 360 CNGRLMLVSP WRPVIGDKHQ ILCVTPIAAA YNSTANFSVR GFNIAQPTTK LLCIFGGKYL 420 VQEATQKLHA DTRIQQGPQC LTFSCSFPST SGRGFIEVED YDQSSICFPF VVAEESICCE 480 IRMLEEKLNI IAFGDALEGR EDLMASRSQA LKFLHEIGWL LQRSHTRATS SKAPQQHHAV 540 GFSAARFRWL LSFAVDQEWC GVVKMLLDTL FQGNIDVASP VDFVLGESLV FAAVNKRSKP 600 LVACLLRYTT KSAPVGSGAV ATPARFLFTP DMTGSSDITP LHVAATITNA AAVLDALTDD 660 PQQLGIKTWK NARDATGYTP EDYARRRGHT SYIKMVENKI NSRLPAAHVS VAMTTTGIAE 720 KHTDDGRPRS TEQTVFDVEK SPPGCRQCVQ LQHIAYRPCP NRFLSNRPAV LSLVAIAAVC 780 VCVGLIMQSP PVIRGLPGPF LWNHIRWGPT

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

PSGCGSRELG RAGEGCSFGA AADKSRRRRR RRVTTVDNPE ECSNTAIHNE RNAVWRGQIG  60
EEEGPASATA GASSSSAPSC QVDGCHADLS DDRDYHRRHK VCEPHTKSTL VRIKNIEHRF  120
CQQCSRFHLV QEFDEGKKSC RSRLATHNRR RRKAPAEAVN SLGENQSLTN TLLLLLRQLA  180
GQDSASSSEQ INGPNLLVSL LKNLAAVAGT QACQDMLKDA TSSNAGNYVG NQSGPPVPAE  240
EPPVKRRAQN FDLNDAYVEE DESRTDKIVF KLFGKQPNDF PADLRAQILN WLSHYPSDME  300
SYIRPGCVIL TIYLRLPNWM WGKINVDPAP WIENLISIST HGFWETGWLY ARVQDRLTLS  360
CNGRLMLVSP WRPVIGDKHQ ILCVTPIAAA YNSTANFSVR GFNIAQPTTK LLCIFGGKYL  420
VQEATQKLHA DTRIQQGPQC LTFSCSFPST SGRGFIEVED YDQSSICFPF VVAEESICCE  480
IRMLEEKLNI IAFGDALEGR EDLMASRSQA LKFLHEIGWL LQRSHTRATS SKAPQQHHAV  540
GFSAARFRWL LSFAVDQEWC GVVKMLLDTL FQGNIDVASP VDFVLGESLV FAAVNKRSKP  600
LVACLLRYTT KSAPVGSGAV ATPARFLFTP DMTGSSDITP LHVAATITNA AAVLDALTDD  660
PQQLGIKTWK NARDATGYTP EDYARRRGHT SYIKMVENKI NSRLPAAHVS VAMTTTGIAE  720
KHTDDGRPRS TEQTVFDVEK SPPGCRQCVQ LQHIAYRPCP NRFLSNRPAV LSLVAIAAVC  780
VCVGLIMQSP PVIRGLPGPF LWNHIRWGPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-25	71	153	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	31	RRRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252086	0.0	AK252086.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf140n19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160961.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A3B6TH70	0.0	A0A3B6TH70_WHEAT; Uncharacterized protein
STRING	Traes_7DS_3880F0FD0.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-167	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]