PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7DS_10A9C68FA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 50aa MW: 6240.12 Da PI: 10.6921 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 63.3 | 5.7e-20 | 1 | 50 | 30 | 88 |
ES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 30 vldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++ Traes_7DS_10A9C68FA.1 1 VWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRR 50 7899*********************************999.........9999999975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00447 | 3.1E-17 | 1 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 5.1E-11 | 1 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.8E-22 | 1 | 50 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.36E-17 | 1 | 50 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.5E-11 | 11 | 23 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 12 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-11 | 24 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 50 aa Download sequence Send to blast |
VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKIVPDR WEFANDCFRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JQ771755 | 2e-73 | JQ771755.1 Triticum aestivum HSF3 mRNA, complete cds. | |||
GenBank | KP063542 | 2e-73 | KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022157722.1 | 3e-33 | heat stress transcription factor B-2b | ||||
Refseq | XP_022157731.1 | 3e-33 | heat stress transcription factor B-2b | ||||
Refseq | XP_022157741.1 | 3e-33 | heat stress transcription factor B-2b | ||||
Refseq | XP_022157749.1 | 3e-33 | heat stress transcription factor B-2b | ||||
Refseq | XP_022157757.1 | 3e-33 | heat stress transcription factor B-2b | ||||
Refseq | XP_022157765.1 | 3e-33 | heat stress transcription factor B-2b | ||||
Refseq | XP_024031939.1 | 3e-33 | LOW QUALITY PROTEIN: heat stress transcription factor B-2b | ||||
Refseq | XP_028767505.1 | 2e-33 | heat stress transcription factor B-2b-like | ||||
Refseq | XP_028779877.1 | 2e-33 | heat stress transcription factor B-2b-like | ||||
Refseq | XP_028779882.1 | 2e-33 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q652B0 | 8e-34 | HFB2C_ORYSJ; Heat stress transcription factor B-2c | ||||
Swissprot | Q6Z9C8 | 7e-34 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A0A9DMW6 | 1e-31 | A0A0A9DMW6_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A0E0LXM8 | 1e-31 | A0A0E0LXM8_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0M3M8 | 1e-31 | A0A0E0M3M8_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0P0XPJ6 | 7e-32 | A0A0P0XPJ6_ORYSJ; Os09g0526600 protein (Fragment) | ||||
TrEMBL | A0A1E5V3Q7 | 1e-31 | A0A1E5V3Q7_9POAL; Heat stress transcription factor B-2c | ||||
TrEMBL | A0A2S3H1H5 | 1e-31 | A0A2S3H1H5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2S3I4N0 | 1e-31 | A0A2S3I4N0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EUW8 | 1e-31 | A0A2T7EUW8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3B6KKD8 | 1e-31 | A0A3B6KKD8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6LQQ2 | 1e-31 | A0A3B6LQQ2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6MVJ6 | 1e-31 | A0A3B6MVJ6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446T9R5 | 1e-31 | A0A446T9R5_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453LDQ9 | 1e-31 | A0A453LDQ9_AEGTS; Uncharacterized protein | ||||
TrEMBL | A6MD12 | 1e-31 | A6MD12_ORYBR; Heat shock factor | ||||
TrEMBL | F2CR81 | 1e-31 | F2CR81_HORVV; Predicted protein | ||||
TrEMBL | I1IS20 | 1e-31 | I1IS20_BRADI; Uncharacterized protein | ||||
TrEMBL | K3ZU13 | 1e-31 | K3ZU13_SETIT; Uncharacterized protein | ||||
STRING | OPUNC08G20670.1 | 2e-32 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11660.1 | 3e-33 | HSF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|